Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03080 347 / 3e-120 Zinc-binding dehydrogenase family protein (.1) AT5G16990 341 / 6e-118 Zinc-binding dehydrogenase family protein (.1) AT5G17000 338 / 1e-116 Zinc-binding dehydrogenase family protein (.1) AT5G16970 337 / 2e-116 AT-AER alkenal reductase (.1) AT1G26320 335 / 1e-115 Zinc-binding dehydrogenase family protein (.1.2) AT5G37940 332 / 4e-114 Zinc-binding dehydrogenase family protein (.1) AT5G38000 330 / 1e-113 Zinc-binding dehydrogenase family protein (.1) AT5G16960 330 / 2e-113 Zinc-binding dehydrogenase family protein (.1) AT5G37980 325 / 2e-111 Zinc-binding dehydrogenase family protein (.1) AT3G59845 317 / 2e-108 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036289 [exp] 476 / 3e-171 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 347 / 4e-120 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 342 / 4e-118 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 336 / 8e-116 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 331 / 1e-113 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 328 / 1e-112 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 326 / 6e-112 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 322 / 4e-110 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 294 / 6e-98 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G142400 [exp] 347 / 3e-120 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 341 / 7e-118 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 340 / 3e-117 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 333 / 7e-115 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G006000 [exp] 332 / 5e-114 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 333 / 6e-114 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 331 / 9e-114 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G004800 [exp] 328 / 2e-113 AT5G16970 409 / 8e-144 alkenal reductase (.1) Potri.007G143700 [exp] 325 / 2e-111 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143800 [exp] 323 / 1e-110 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003638 pacid=23141619 polypeptide=Lus10003638 locus=Lus10003638.g ID=Lus10003638.BGIv1.0 annot-version=v1.0 ATGACGACGACGAGGAGGAGGAACAAGCAAGTGATACTAAACGACTACGTATCGGGATTCCCAAAAGAATCCGACATGTCCATTGCCATGGGAAGCATCC CAGATTCCGACGGCGGCCTAGTCCTTCAAAATCTCTACTTATCATGCGATCCGTACATGCGGCCTCGTATGTCCAAAAGCCAAGGCGGCTCCTCCTACGT CTCCTCCTTTCAACCTGGACCGCCATTGAGTGGATTAGGAGTGGCAAAGGTTATGGAAACAACAGGAGATTCAGATTTCCAAAAGGGAGATTTGGTTTGG GGTATGACTGGTTGGGAAGAGTACAGCGTTAACACACAACCTTTCCAGTTTTTCAAGATGCAACACAGTGATAATGTTCCACTCTCCTATTACACTCGAA TTCTCGGTATGCCTGGGATGACAGCTTATGTCGGATTGCACGAGCTTTGCTCCCCTAAAACCGGAGAGTTTGTGTTTGTATCAGCAGCTTCTGGTGCTGT TGGTCAGCTTGTTGGCCAGTTTGCTAAGTTGGCTGGCTGCTATGTTGTTGGAAGTGCTGGTACTGATAAAAAAGTTGATCTTCTCAAGAACAAGTTTGGT TTCGACGATGCTTTCAACTACAAACAAGAGCCAGACTTGGATGCTGCATTGGAAAGATACTTCCCTCAAGGTATAGACATCTACTTTGAGAGTGTGGGAG GGAAGATGCTGGAAGCTGTCCTGGCCAACATGAGACTCCATGGCAGGATTGCTGTTTGTGGTATGATCTCACAGTACAACCTGGAGTCCACAACTTGA
AA sequence Show only first row Show all	>Lus10003638 pacid=23141619 polypeptide=Lus10003638 locus=Lus10003638.g ID=Lus10003638.BGIv1.0 annot-version=v1.0 MTTTRRRNKQVILNDYVSGFPKESDMSIAMGSIPDSDGGLVLQNLYLSCDPYMRPRMSKSQGGSSYVSSFQPGPPLSGLGVAKVMETTGDSDFQKGDLVW GMTGWEEYSVNTQPFQFFKMQHSDNVPLSYYTRILGMPGMTAYVGLHELCSPKTGEFVFVSAASGAVGQLVGQFAKLAGCYVVGSAGTDKKVDLLKNKFG FDDAFNYKQEPDLDAALERYFPQGIDIYFESVGGKMLEAVLANMRLHGRIAVCGMISQYNLESTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	0	1
AT1G30050			unknown protein		Lus10035609 [exp]	1.0	0.9986
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	5.8	0.9939
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	7.1	0.9939
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	7.6	0.9331
					Lus10009618 [exp]	8.2	0.9939
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	9.2	0.9939
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10039747 [exp]	9.7	0.8893
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	10.1	0.9939
AT2G43610			Chitinase family protein (.1)		Lus10001772 [exp]	10.5	0.9933
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	10.6	0.9356

Compare expression of checked genes

Lus10003638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.