Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24270 930 / 0 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G74920 229 / 3e-69 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 212 / 3e-62 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 203 / 4e-59 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 199 / 2e-57 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 199 / 2e-57 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 182 / 2e-51 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G66658 157 / 1e-41 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G14170 151 / 4e-40 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G54100 125 / 9e-31 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036288 [exp] 1020 / 0 AT2G24270 929 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10012999 [exp] 207 / 2e-60 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10029166 [exp] 207 / 3e-60 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10042149 [exp] 201 / 2e-58 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043470 [exp] 189 / 7e-54 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10034115 [exp] 186 / 3e-52 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10001845 [exp] 180 / 1e-50 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10042148 [exp] 174 / 8e-49 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 161 / 4e-44 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186800 [exp] 970 / 0 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G109700 [exp] 965 / 0 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G020600 [exp] 932 / 0 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.010G174000 [exp] 219 / 6e-65 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 210 / 8e-62 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 206 / 2e-60 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G078700 [exp] 207 / 3e-60 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 201 / 4e-58 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 197 / 2e-56 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.001G283100 [exp] 167 / 2e-45 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10003640 pacid=23141616 polypeptide=Lus10003640 locus=Lus10003640.g ID=Lus10003640.BGIv1.0 annot-version=v1.0 ATGGCTGGGAGTGGAGTATTTGCAGAGATATTGAATATTGAGGATGAGGTATACAAGTATTACAGTGATGGGGAGTGGAAGAAGTCAGCTTCTGGGAAGA GTGTTGCCATTGTCAACCCAACTACTAGGAAGACTCAGTACAGAGTTCAAGCATGTTCACAGGAGGAAGTGAACAAGGTGATGGAGTCAGCAAGGAGTGC ACAGAAAGAATGGGCAAAGACGCCACTTTGGAAGAGAGCTGAGCTTCTACACAAGGCAGCTGCCATCTTGAAAGAGCACAAGTTCCCTATTGCTGAATGC CTTGTTAAAGAGATTGCCAAGCCTGCCAAAGATGCTGTCACTGAGGTTGTGAGGTCAGGGGATCTTGTGTCATACACTGCTGAAGAAGGTGTTAGGATTC TTGGAGAAGGCAAGTTCTTGGTATCTGATAGCTTTCCGGGGAACGAGAGGACCAAATACTGCCTTACTTCCAAGATCCCTCTTGGAATAATTCTAGCAAT CCCACCGTTCAACTACCCAGTGAACCTAGCAGTATCAAAGATTGGGCCAGCATTGATTGCAGGAAACTCGCTAGTCCTCAAGCCTCCAACACAGGGTGCA GTATCATGCCTTCACATGGTCCACTGCTTCCACTTAGCCGGCTTCCCTAAAGGCCTCATCAGCTGTGTCACAGGTAAAGGCTCCGAAATCGGCGACTTCC TCACCATGCACCCTGGAGTTAACTGCATCAGCTTCACTGGAGGGGATACCGGTATAGCAATCTCGAAGAAGGCTGGAATGATCCCTCTCCAGATGGAATT GGGTGGTAAAGATGCTTGCATTGTGCTTGAAGATGCTGACCTTGACTTGGTTGCTGCTAACATCATCAAGGGTGGCTTTTCTTACAGTGGGCAGAGGTGC ACGGCGATCAAGGTGGTACTAGTGATGGAGTCGGCCGCTGCTTCGCTGGTGGAGAAAGTGAAAGTGAGGGTGGCGAAGCTGCGAGTTGGGGCGCCTGAGG ACGATGCTGACATAACGCCTGTAGTGACGGAATCGTCAGCAAACTTCATAGAAGGGCTGGTGATGGATGCAAAGGAGAAAGGAGCAACATTTTGCCAAGA GTACAAAAGGGAAGGTAACCTGATATGGCCATTGTTGTTGGACAATGTGAGGCCAGATATGAGGATAGCTTGGGAAGAGCCATTTGGGCCAGTGCTTCCT GTTATCAGGATCAACTCTGTTGAAGAAGGCATTCACCACTGCAATGCCAGCAACTTTGGGCTTCAGGGTTGTGTCTTCACTAAGGACATCAACAAGGCAA TGCTGATCAGTGATGCAATGGAGACCGGCACTGTTCAGATCAACTCCGCCCCAGCTCGTGGGCCCGACCATTTTCCCTTCCAGGGAATAAAAGACAGTGG GATAGGGTCACAAGGGATAACAAACAGCATCAACATGATGACCAAAGTGAAGACCACTGTTATCAATTTGCCAACCCCATCTTACACCATGGGTTAG
AA sequence Show only first row Show all	>Lus10003640 pacid=23141616 polypeptide=Lus10003640 locus=Lus10003640.g ID=Lus10003640.BGIv1.0 annot-version=v1.0 MAGSGVFAEILNIEDEVYKYYSDGEWKKSASGKSVAIVNPTTRKTQYRVQACSQEEVNKVMESARSAQKEWAKTPLWKRAELLHKAAAILKEHKFPIAEC LVKEIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGIILAIPPFNYPVNLAVSKIGPALIAGNSLVLKPPTQGA VSCLHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRC TAIKVVLVMESAAASLVEKVKVRVAKLRVGAPEDDADITPVVTESSANFIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLP VIRINSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	0	1
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	4.5	0.9254
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	4.6	0.9141
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	4.9	0.9231
AT1G22850			SNARE associated Golgi protein...		Lus10041062 [exp]	5.0	0.9187
AT5G44005			unknown protein		Lus10008224 [exp]	5.6	0.8785
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	6.5	0.8977
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10010200 [exp]	7.3	0.9181
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	7.5	0.9223
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	7.7	0.8811
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	7.9	0.9233

Compare expression of checked genes

Lus10003640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.