Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35410 251 / 7e-87 Clathrin adaptor complex small chain family protein (.1.2) AT2G17380 248 / 1e-85 AP19 associated protein 19 (.1) AT1G47830 134 / 8e-41 SNARE-like superfamily protein (.1) AT2G19790 107 / 3e-30 SNARE-like superfamily protein (.1) AT3G50860 92 / 5e-24 Clathrin adaptor complex small chain family protein (.1) AT1G60780 40 / 0.0004 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 39 / 0.0005 Clathrin adaptor complexes medium subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026316 [exp] 228 / 2e-77 AT2G17380 297 / 7e-105 associated protein 19 (.1) Lus10042352 [exp] 228 / 3e-77 AT2G17380 297 / 3e-104 associated protein 19 (.1) Lus10024337 [exp] 136 / 2e-40 AT1G47830 274 / 5e-95 SNARE-like superfamily protein (.1) Lus10012924 [exp] 106 / 9e-30 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1) Lus10035004 [exp] 103 / 8e-29 AT2G19790 262 / 6e-92 SNARE-like superfamily protein (.1) Lus10041742 [exp] 95 / 5e-25 AT3G50860 278 / 6e-97 Clathrin adaptor complex small chain family protein (.1) Lus10024011 [exp] 82 / 6e-20 AT3G50860 215 / 3e-72 Clathrin adaptor complex small chain family protein (.1) Lus10026688 [exp] 42 / 6e-05 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10004626 [exp] 42 / 7e-05 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052000 [exp] 255 / 2e-88 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 250 / 2e-86 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2) Potri.002G001800 [exp] 223 / 1e-75 AT2G17380 278 / 3e-97 associated protein 19 (.1) Potri.005G238701 [exp] 136 / 1e-41 AT1G47830 275 / 8e-97 SNARE-like superfamily protein (.1) Potri.002G022900 [exp] 132 / 6e-40 AT1G47830 278 / 6e-98 SNARE-like superfamily protein (.1) Potri.006G149100 [exp] 108 / 8e-31 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1) Potri.007G025400 [exp] 97 / 8e-26 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.005G122900 [exp] 95 / 4e-25 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1) Potri.010G044700 [exp] 44 / 1e-05 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 41 / 0.0002 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10003641 pacid=23141618 polypeptide=Lus10003641 locus=Lus10003641.g ID=Lus10003641.BGIv1.0 annot-version=v1.0 ATGGTATTCGACTTATTCACAGAAAGAACGATCCAAGGTAGGCTTAAAGGCTATTTTCTGTTGATAGCCATTTGTGACTGCCAAGGAGCCATCCGTGAGA TTAGTGGAGTAATCTTAAGCCGAGGCCCGAAGCTCTGCAACTTTGTTGACTGGAAAGGACAGAAAGTTGTTTACAAAAGATATGCTAGCCTATATTTCTG CATGTGCATTGATCAGGATGACAACGAGCTAGAGGTCCTTGAAATTATTCACCATTTCGTCGAGATTCTGGACAGATACTTTGGCAGTGTATGCGAGTTG GATTTGATCTTCAACTTCCACAAGGCTTATTATATATTGGATGAGCTCCTAATCGCTGGCGAACTCCAGGAATCAAGCAAAAAAACAGTAGCCAAATTAA TATCTGCACAGGATTCACTAGTAGAGGCTGCAAAAGAGGAGGCAAGCTCCATAAGCAATATAATTGCTCAGGCCACAAAGTAA
AA sequence Show only first row Show all	>Lus10003641 pacid=23141618 polypeptide=Lus10003641 locus=Lus10003641.g ID=Lus10003641.BGIv1.0 annot-version=v1.0 MVFDLFTERTIQGRLKGYFLLIAICDCQGAIREISGVILSRGPKLCNFVDWKGQKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCEL DLIFNFHKAYYILDELLIAGELQESSKKTVAKLISAQDSLVEAAKEEASSISNIIAQATK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	0	1
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10025176 [exp]	1.4	0.8747
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	2.0	0.8533
AT5G58030			Transport protein particle (TR...		Lus10003634 [exp]	2.4	0.8395
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	3.9	0.8605
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	8.4	0.8375
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	9.1	0.8697
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	10.0	0.8452
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	10.6	0.7976
AT1G11050			Protein kinase superfamily pro...		Lus10018860 [exp]	12.6	0.8150
AT5G47540			Mo25 family protein (.1)		Lus10027342 [exp]	13.7	0.8021

Compare expression of checked genes

Lus10003641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.