Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35200 377 / 2e-125 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 342 / 1e-110 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 337 / 5e-109 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 338 / 4e-108 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 331 / 7e-107 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 166 / 3e-44 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 164 / 6e-44 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 157 / 4e-41 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 127 / 5e-31 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 120 / 8e-29 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038122 [exp] 380 / 2e-126 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 375 / 3e-124 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 340 / 3e-110 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 339 / 8e-110 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 338 / 2e-109 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 336 / 2e-108 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 342 / 4e-108 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 199 / 5e-56 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 167 / 2e-44 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125107 [exp] 385 / 3e-128 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 383 / 2e-127 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 375 / 2e-124 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 347 / 2e-113 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 345 / 2e-112 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 334 / 5e-108 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 324 / 3e-104 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 259 / 2e-83 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 183 / 1e-50 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 175 / 9e-48 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10003642 pacid=23145344 polypeptide=Lus10003642 locus=Lus10003642.g ID=Lus10003642.BGIv1.0 annot-version=v1.0 ATGGCAAACGGCAGTGGGAGCCAGAAGACAATACGGCAAGCTATTGGGGCACTTAAAGATACTACCAAGGTTGGATTGGTAAAAGTGAATAGTGAATACA AGGGTATCGACATTGCAATTGTGAAAGCCACAAGCCACGACGTCGTACTGCCAAAGGAAAAGCACATTAAGACAATTTTTTGTGCCCTCTCCCCAACAAG TCCTCGTGCCGATGTTGCTCATTGCATTCATCGGCTCATCAAGCGTCTCTCCAAAACACATACTTGGACGGTTGCATTGAAGACACTACTCATTATTCAT CGTTCGATTAGGGAAAATGATCCTTCTTTCCCAGAAGAATTGATTAATTATAGTCGGGGTAGAAATTTGATGCTAAACTTGTCTCACTTCAGAGATTCTT CTACCATAGAAGCTCGGGATTATTCGACTTGGATACGTACGTATGCTCTGTACCTTGAAGAGAGGCTCGAATGTTATCGAGTTATGAAGTATGACATCAA CAGGGATCCATCGGGAACAAAAATGCTTGACAACAATGGATTATTTGAGCAACTACCTGCTATGCAACTATTACTCTTTCGTCTTCTTGCTTGTAAGCCA GAGGGAGCAGCTGTACGAAATAGCTTAATACACTATTGTCTTTCAGTGGTCGGATGTGAGGCTAGTAGCCTCTATATTGGCATCAGTAATGGAATCATGA ACTTAGTGGACAAGTTTTTTGAGATGCGACCAGGCGATGCAACTAGAGCCCTTGAGATTTACAAGAGGGCTTCAACTCAAGCGAGTAAATTATCAGACTT CTTCGAGATATGTAGAGCCTACGATGTCAACCATGAATTGAGATTTGCAAAAATTGAGCAGGCTCCTGCATCGTTTGTGACGGCCATGGAAGATTATGTT AAACAAAATTCACCCACCTCATCCTCACAAACTCGACTTAGAAATTATGACGATGAAGCAATTAGTCGAAAACCAGTAGATTTCACTACAAAAGTGGTTT CCCCAATTATTCCCGTGGATCTATTCGACTCAGAGCCAGAAGTCATGGATGTAACCGTCAATCCATCCCAAGAAATTCCAGCAGGAAACATTGACACGGG AAATATCCATAGCAACAGTTTTGCAACATCTCAAGCTACAAGTTGGGAGCTAGCTCTAGTCACGGCCTTCAGCTATGATGATGAAGTTAACCCTAATCCA ACGACTCTTAATAATACTTTGGCTGGTGGATTTTATAAGACAGAATTGGATAAGGTAACACTAGAAGGCTTATACGGAGAAGTAACAACGGCAGACAGAC CTAATCAAATTTTTGGTGACGACATGAATCCGGAAGAGGAAGTTAACCCATTTGGAGCGTCCATGAGTCAAGACTACAACCACCAAGATCCGTGTTTGGC TTCTAATACCACGGCAATGAGTCAGCAAGACCTCTCATTCAATATGTTTCGATCAGAGGAAGTAATTTATAAGGGTGAGAGTAATGGTACTTCTTCAAGG GAATGTGTTGAGAACCCTTTCATTGATTCTTCACACTATATGCTTCCTTCTTACCATCATCTACCTCATCCCCATACCTCATTTTCTGTCTTGATGTAG
AA sequence Show only first row Show all	>Lus10003642 pacid=23145344 polypeptide=Lus10003642 locus=Lus10003642.g ID=Lus10003642.BGIv1.0 annot-version=v1.0 MANGSGSQKTIRQAIGALKDTTKVGLVKVNSEYKGIDIAIVKATSHDVVLPKEKHIKTIFCALSPTSPRADVAHCIHRLIKRLSKTHTWTVALKTLLIIH RSIRENDPSFPEELINYSRGRNLMLNLSHFRDSSTIEARDYSTWIRTYALYLEERLECYRVMKYDINRDPSGTKMLDNNGLFEQLPAMQLLLFRLLACKP EGAAVRNSLIHYCLSVVGCEASSLYIGISNGIMNLVDKFFEMRPGDATRALEIYKRASTQASKLSDFFEICRAYDVNHELRFAKIEQAPASFVTAMEDYV KQNSPTSSSQTRLRNYDDEAISRKPVDFTTKVVSPIIPVDLFDSEPEVMDVTVNPSQEIPAGNIDTGNIHSNSFATSQATSWELALVTAFSYDDEVNPNP TTLNNTLAGGFYKTELDKVTLEGLYGEVTTADRPNQIFGDDMNPEEEVNPFGASMSQDYNHQDPCLASNTTAMSQQDLSFNMFRSEEVIYKGESNGTSSR ECVENPFIDSSHYMLPSYHHLPHPHTSFSVLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	2.0	0.9163
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10001226 [exp]	2.2	0.8901
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	5.4	0.9247
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	8.5	0.8575
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	11.4	0.8793
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10017440 [exp]	11.9	0.7893
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	12.7	0.8890
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	13.2	0.8997
AT4G21340	bHLH	bHLH103, B70	basic helix-loop-helix (bHLH) ...		Lus10005959 [exp]	15.9	0.8676
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10005635 [exp]	16.5	0.8590

Compare expression of checked genes

Lus10003642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.