Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22200 483 / 2e-163 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G26650 302 / 3e-93 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 269 / 2e-80 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 264 / 7e-79 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 191 / 2e-53 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT3G02850 179 / 2e-48 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT4G18290 174 / 3e-47 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 167 / 2e-45 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G37500 167 / 2e-44 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G03430 53 / 1e-07 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019944 [exp] 506 / 5e-172 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 491 / 8e-166 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10043298 [exp] 316 / 4e-98 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 314 / 2e-97 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 301 / 1e-92 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10008082 [exp] 292 / 1e-89 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10002529 [exp] 292 / 4e-89 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 288 / 5e-88 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10042831 [exp] 222 / 4e-64 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G018800 [exp] 501 / 9e-170 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.018G031600 [exp] 300 / 4e-92 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 293 / 2e-89 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 292 / 3e-89 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G154600 [exp] 275 / 4e-85 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 250 / 2e-74 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 180 / 2e-49 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 179 / 2e-49 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 180 / 1e-48 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 178 / 3e-48 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0030 [flax] [poplar] Ion_channel PF07885 [flax] [poplar] Ion_trans_2 Ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003644 pacid=23145342 polypeptide=Lus10003644 locus=Lus10003644.g ID=Lus10003644.BGIv1.0 annot-version=v1.0 ATGACCACCGTAGGATACGGCGACCTCAGGGCAGAAAACACTCGAGAGATGATATTCGTAACCATCTACATGCTCTTCAACCTTGGCCTAACCGCCTACT TGATAGGAAACATGACTGATCTCGTGGTCGAGAGCGCTCGCCGCACCATGGACTATAGGAAAGGCGTGGAATTAGCAACAAGTTTTGTGAACAGAAACTG CTTGCCAACCAGGGTAGAGGAGCAAGTTGTGGGATACATGTCGTTAAGATTCAAGGCAGAGAGGATGAACCAGCAGAGATTAATGGAACAGCTTCCTAAA TCCATACGGAGGAGAGTTTGCCGCCACTTGTTCTTGCCCTCCTTACAGCGATCCTACCTTTTCAGGGACGTCTCCCTCGGCACACTAATGACCCTAGTTT CAAATATGAGGGCAGAGTACATGCCGGCGAAAGAAGAAGTGATCCTGCAGAAAGAAGCCTCGAATGAAGTGTACATAATCGTGTCTGGAGAAGTAGAAAT CGTAGGTGTTGATGACGAGTTCGGACATGGACAGTCAACGCTGGGGAGCTTGCGCTCTGGGGATATACTTGGGGAAGTCGCTGCGGTTTGTGGCAAACCT CAGGGTTTCACTTTCCGAACCAAACTTCTCTCACAACTGTTGACGCTTAGGACAACCGCGATTTTGGAAGCTATGTATAATAACCATAGGGATTCTGTTG CCGTCATCAAAAACTTCCTCCAGCATTATAAACGGAACGCCAAGAACCTGAGAAACGATGATGTGATGCTGTTCAATGACCATGAGTTAGAAACCAAAAA TACATTTTCTTATCTGTTGCCTCTCGCAAGACTTGGCAATGCTTTTTTCCTTGAAGAATTGCTCAGAGAAGGGTTGGATCCTAACGTTTCAGACTCGGCC GGAAAAACTCCATTGCACATAGCAGCATCAAATGGGCATGAACTCTGTGTGTTGGTGCTTCTTAGATACGCCTGCAACACAAACTTGACAGATTTGGATG GCAATACTGCATTATGGGAAGCATTATCATCAAACCACAACTCAATCTTCAGAATTTTATATGAGCACACCACCATTGTTTCCGACAAGAATGTCCAAAC CATCAATGGCGATCTACTATGCACCGCGGCAGAGCGAAACGATCTGAAAGCGACGAGGGAGCTAGTGAGACTGCATGGATTCGACGTCCACTCCAAGGGT CAACGTGGGAAGACACCTCTTCAAGTGGCCATGGAATTGGACCATGCTGACATTGTAGATTACCTCATTGCAAATGGTAAATCACAAGCAGTAATACTAG AAGATCATCCATGTTTTCCTTTGAGGGTAAATTTGTTCATGGGTCATCCTTTGGAGGGAAATGCCATGAGATTCGGCAACTTGGTTAAATTGCCGAATTC TATGGAGGAGCTCAAAAGGATCGCAGGAGAGAGGTTTGGGATTGGTGCAAGCAATGCTAGAATAATGAACGAGTTGGGTGCTGAAATTGAATGTCTTGAG GTTGTAAGAGACAATGACAAACTTTTTATAATCAAACACACACTACATTAA
AA sequence Show only first row Show all	>Lus10003644 pacid=23145342 polypeptide=Lus10003644 locus=Lus10003644.g ID=Lus10003644.BGIv1.0 annot-version=v1.0 MTTVGYGDLRAENTREMIFVTIYMLFNLGLTAYLIGNMTDLVVESARRTMDYRKGVELATSFVNRNCLPTRVEEQVVGYMSLRFKAERMNQQRLMEQLPK SIRRRVCRHLFLPSLQRSYLFRDVSLGTLMTLVSNMRAEYMPAKEEVILQKEASNEVYIIVSGEVEIVGVDDEFGHGQSTLGSLRSGDILGEVAAVCGKP QGFTFRTKLLSQLLTLRTTAILEAMYNNHRDSVAVIKNFLQHYKRNAKNLRNDDVMLFNDHELETKNTFSYLLPLARLGNAFFLEELLREGLDPNVSDSA GKTPLHIAASNGHELCVLVLLRYACNTNLTDLDGNTALWEALSSNHNSIFRILYEHTTIVSDKNVQTINGDLLCTAAERNDLKATRELVRLHGFDVHSKG QRGKTPLQVAMELDHADIVDYLIANGKSQAVILEDHPCFPLRVNLFMGHPLEGNAMRFGNLVKLPNSMEELKRIAGERFGIGASNARIMNELGAEIECLE VVRDNDKLFIIKHTLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003644 [exp]	0	1
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	1.4	0.8683
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	3.7	0.8654
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10008413 [exp]	4.2	0.7741
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	4.6	0.7437
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	5.5	0.8676
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	6.7	0.8676
					Lus10001379 [exp]	6.9	0.8009
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	7.7	0.8676
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	8.7	0.8676
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10037137 [exp]	9.0	0.8605

Compare expression of checked genes

Lus10003644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.