Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44440 197 / 5e-60 FAD-binding Berberine family protein (.1) AT5G44390 190 / 3e-57 FAD-binding Berberine family protein (.1) AT5G44380 190 / 3e-57 FAD-binding Berberine family protein (.1) AT2G34790 190 / 3e-57 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30760 190 / 4e-57 FAD-binding Berberine family protein (.1) AT4G20820 189 / 9e-57 FAD-binding Berberine family protein (.1) AT5G44360 184 / 4e-55 FAD-binding Berberine family protein (.1) AT5G44400 184 / 5e-55 FAD-binding Berberine family protein (.1) AT5G44410 181 / 7e-54 FAD-binding Berberine family protein (.1) AT1G34575 174 / 2e-51 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032943 [exp] 417 / 1e-145 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 228 / 1e-71 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 227 / 2e-71 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 218 / 1e-67 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 211 / 1e-65 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 210 / 7e-65 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 204 / 2e-62 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 193 / 3e-58 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 189 / 6e-57 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461800 [exp] 253 / 3e-81 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 251 / 1e-80 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 250 / 2e-80 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462100 [exp] 248 / 1e-79 AT4G20820 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 247 / 3e-79 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 244 / 4e-78 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 243 / 9e-78 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G157900 [exp] 243 / 1e-77 AT5G44440 546 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 243 / 2e-77 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 243 / 2e-77 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10003646 pacid=23171421 polypeptide=Lus10003646 locus=Lus10003646.g ID=Lus10003646.BGIv1.0 annot-version=v1.0 ATGGCAACCATACACAAAGTAAATACAACGATCCGGGCCACTTTCAACTCGATGTACCTCGGTGGAATCGAAGGAGTTCTTCAATTGATTGGGGAGAGAT TTCCAGAGCTAGGGTTGTCGAAATCGGACTGTACGGAGATGAGCTGGATAGAATCAACCGTACATTTCGCCAGGTTCCCGAGGACTATTTCTTCGGAGAT TCTGCTGAACATGACGATTACTCTCCTGACGGGAACGGCCAAGTACAAAGGGAAATCCGATTACGTCCAGAAACCTATACCTGAAATCGGATGGGAAGGT GTATGGAAGAAACTGGACGAATTGGGACCGATGGCGGGTGCGTTGGTGATGATTCCCTACGGAGGAAAGATGGAGGAGATTCCGGAATGGAGCTTGCCGT TCCCGTACAGAGCAGGAAACCTGTTCATGATCCAGTACGACGTGTTCTGGGGCGAAGATGGGATTGAAGCATCGGAGAGGAACGTGAATTGGATAAGAGA AGTATACAGTTACATGACTCTGTTTGTTTCGAAGAGCCCTAGAGCTGCGTATATGAATTATAGGGATTTGGATGTTGGAATGAACGACGTGAATGGAGGG AAAGGTAGGGGTTACAAAGAAGAAGAAGAAGCGAGGGTTTGGGGACTGAAGTATTTCAAGAGCAACTGGGATAAATTGGTGAAAGTGAAGACGGCTGTTG ATAAACATTCGCCCTAA
AA sequence Show only first row Show all	>Lus10003646 pacid=23171421 polypeptide=Lus10003646 locus=Lus10003646.g ID=Lus10003646.BGIv1.0 annot-version=v1.0 MATIHKVNTTIRATFNSMYLGGIEGVLQLIGERFPELGLSKSDCTEMSWIESTVHFARFPRTISSEILLNMTITLLTGTAKYKGKSDYVQKPIPEIGWEG VWKKLDELGPMAGALVMIPYGGKMEEIPEWSLPFPYRAGNLFMIQYDVFWGEDGIEASERNVNWIREVYSYMTLFVSKSPRAAYMNYRDLDVGMNDVNGG KGRGYKEEEEARVWGLKYFKSNWDKLVKVKTAVDKHSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	0	1
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	2.2	0.8530
					Lus10034961 [exp]	3.7	0.8203
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	4.2	0.8181
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	7.2	0.7807
					Lus10020274 [exp]	10.2	0.7682
AT2G28105			unknown protein		Lus10016142 [exp]	10.8	0.7040
					Lus10035252 [exp]	14.3	0.6744
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10003990 [exp]	15.2	0.7401
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10019238 [exp]	15.7	0.6930
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	18.8	0.7690

Compare expression of checked genes

Lus10003646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.