Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40600 135 / 7e-38 EMB1875 unknown protein AT3G27420 129 / 4e-36 unknown protein AT3G52280 50 / 9e-07 GTE6 general transcription factor group E6 (.1.2) AT2G34900 45 / 4e-05 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT1G06230 44 / 8e-05 GTE4 global transcription factor group E4 (.1.2.3) AT5G65630 42 / 0.0004 GTE7 global transcription factor group E7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042803 [exp] 49 / 3e-06 AT2G34900 362 / 3e-123 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10029774 [exp] 48 / 4e-06 AT2G34900 378 / 5e-130 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101100 [exp] 188 / 1e-58 AT5G40600 95 / 1e-22 unknown protein Potri.010G219200 [exp] 56 / 1e-08 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.008G043000 [exp] 53 / 9e-08 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.001G073800 [exp] 43 / 0.0002 AT2G34900 350 / 7e-119 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003647 pacid=23171437 polypeptide=Lus10003647 locus=Lus10003647.g ID=Lus10003647.BGIv1.0 annot-version=v1.0 ATGAAAGAAGCTTCAGGGAGCGAGGAGGATGCTATGAACAAAGAGGGTCCAGACTACTTTGCTTACTATGCATGTGAAGTTAAGGACTTGCTCTCACAAG ACAAAGATTTCTTGCCTTCGTCTACTGAATCAAAAGGAAATCAAAATGGCCAGACGCTTGATCAAAAGATTGTTAGCCATGGTTTCAGTGGTTCACATTC ATTATTTAGCAACAGGGCAGGTGCTACGCTTTCAGATTACAAGAAGGAAAGGCTGACTGCTTTGCTTCCGCAGGCTGTGAGATCTCTTAAACCGGAAGTT AATGAGATGATTGATCCTGTTCTTTCCATGCGTAAGTTGCAAGAGCAAATTAGAGGCAATGATTCTGTATCAGGAAACAAAGGTACAAAACCTGATGGAG ATGGAGGACAAATTTCTGACTCAAAACTTCAGAATGACGATGATATGAACTTATTACTTGTGACAGACAAGACTATTGTTCAAGAGTCTATAAATAAGTA TTCAGATCAGTTATCTTCAACTCTAGGCCACATGGAGAACAAGCTCGAAGAACTTCTTGATACCGTTGCGTCTACTTGCAGACCCATGACGAGCACTGAG AAGGTGCAGCTTCAAAAGATGATCAGGAACCTGCCACCGGTAAACCTTAATCGCATTGCAGATATAGTCCAGCGCCAGAAGTCTAATGAAAAGCAACAAA ATGAAGAAATTTTTGTAAATCTGGAGCAAGAGGATAATGTCACACTCTGGAGGTTGTATTACTATGTTCAAGTAGTGGAACGGAGCGGGGTAAGAAACTC CCACCCTGCTGAGTAG
AA sequence Show only first row Show all	>Lus10003647 pacid=23171437 polypeptide=Lus10003647 locus=Lus10003647.g ID=Lus10003647.BGIv1.0 annot-version=v1.0 MKEASGSEEDAMNKEGPDYFAYYACEVKDLLSQDKDFLPSSTESKGNQNGQTLDQKIVSHGFSGSHSLFSNRAGATLSDYKKERLTALLPQAVRSLKPEV NEMIDPVLSMRKLQEQIRGNDSVSGNKGTKPDGDGGQISDSKLQNDDDMNLLLVTDKTIVQESINKYSDQLSSTLGHMENKLEELLDTVASTCRPMTSTE KVQLQKMIRNLPPVNLNRIADIVQRQKSNEKQQNEEIFVNLEQEDNVTLWRLYYYVQVVERSGVRNSHPAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	0	1
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	1.4	0.9129
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	2.2	0.8719
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	2.8	0.8944
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	4.2	0.9105
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	4.6	0.8958
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	6.0	0.8484
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	6.5	0.8318
					Lus10043057 [exp]	7.5	0.8450
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	8.8	0.8607
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	8.9	0.8412

Compare expression of checked genes

Lus10003647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.