Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01660 204 / 4e-66 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G29590 87 / 2e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022301 [exp] 268 / 3e-91 AT3G01660 345 / 5e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040550 [exp] 93 / 1e-22 AT4G29590 429 / 3e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G340900 [exp] 226 / 9e-75 AT3G01660 361 / 3e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G150500 [exp] 89 / 2e-21 AT4G29590 415 / 9e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003648 pacid=23171435 polypeptide=Lus10003648 locus=Lus10003648.g ID=Lus10003648.BGIv1.0 annot-version=v1.0 ATGGAGTTCAAAAGAGTCGTGGGTCATGGGCTTAACGCCCAGGAGCTTGCCTGGAACCCTCGACTTGATCATTTCTTTGTCAAGGATCTTAACAAGGAAC ATAAGCTTGAGCTGGAAAGCGCCAGCTTTGATGCCGTTCTTTGCACTGTTAGCGTCCAGTATCTGCAGCAACCGGAGCAGGTAGTTTTTGCCCCAAATTC AACACAATATTCAATTCTCATCATTCTTATTCTCTTGCTCCTTGCTATTATAACAGGTTTTGCGGAAGTGTTCAGAGTGCTGAGACCAGGAGGCGTTTTC ATTGTGAGTTTTAGCAATCGGATGTTCTACGAAAAGGCAGTTGCTTCCTGGAGAGATGGTAGCGAGTATAGCAGAGTGCAGCTTGTAATACAGTATTTCC AGACTGTGGTTGGATTTACGGAGGCGGAGGTTGTCAGGAAATTGCCTGGCAGGAGAGAGGAAAGTACAGGGTCCAGTTGGTTCAAAGGGTTGCTTGGCCT GTTGTCTGGATCATCATCAGATCCCTTTTATGCTGTCATCGCTTACAAGAACTTTAAGCCTGTTAATGAATGA
AA sequence Show only first row Show all	>Lus10003648 pacid=23171435 polypeptide=Lus10003648 locus=Lus10003648.g ID=Lus10003648.BGIv1.0 annot-version=v1.0 MEFKRVVGHGLNAQELAWNPRLDHFFVKDLNKEHKLELESASFDAVLCTVSVQYLQQPEQVVFAPNSTQYSILIILILLLLAIITGFAEVFRVLRPGGVF IVSFSNRMFYEKAVASWRDGSEYSRVQLVIQYFQTVVGFTEAEVVRKLPGRREESTGSSWFKGLLGLLSGSSSDPFYAVIAYKNFKPVNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	0	1
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10018870 [exp]	2.0	0.8510
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10042410 [exp]	4.0	0.8323
AT3G52230			unknown protein		Lus10037916 [exp]	5.7	0.8264
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	9.7	0.8260
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	10.4	0.8190
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	11.7	0.8233
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	12.6	0.8200
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10014319 [exp]	16.6	0.7757
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	16.7	0.7964
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10003506 [exp]	17.3	0.7702

Compare expression of checked genes

Lus10003648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.