Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11810 301 / 4e-102 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022300 [exp] 564 / 0 AT5G11810 322 / 2e-110 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230000 [exp] 403 / 3e-142 AT5G11810 333 / 9e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003649 pacid=23171429 polypeptide=Lus10003649 locus=Lus10003649.g ID=Lus10003649.BGIv1.0 annot-version=v1.0 ATGGCAGACATGCCAAGCAGATCACTGGTACTGTACGGTGATGGCCTGGGTCGTTTTGTTGATTTCTCGCACACCCATCTCCACTCCCTTGCTTCTAAAG CGACTTGCGGCTTCTTGAGCCTCCCTCCCCAACGCCCCTCCCTCAGTGAGGATGAGAGGACAGTTAGAGAATTTGCTCTGCTTTTGGATTCTTGGGACAC TGCCAATCAGAGCACGAATAATGCCTCAACTCCAACCATTGCAGATAGGTTCATGGGAATGAAGGCTGCCGTAGTCACAAATAATCCTTCTTTGAGATCT TTTGGTGGGAAGATTGGCTTAACTGTATTTCCGTTTAATGACGTTTCTTGTGAGTCTATGGGTTTGGAGCTAATGAGCATGCTCGGGTTTCAAGAAGGAA GCGTGGTAGATATCAGTCAATTTGATATAGTGTTTGTCCACAAGGGTTCTGGGGAAACTAAGGATGGTGATAAAGACAATCGTGGTGCCCTAGATGTTGC TTTTATCAATTCTCTAGTTGATGGGATAATGCATGCAGCCGAACCTGGTTCTGCAATTGGTTCACGGCTACACTTGTCACTTGTGATGAGCTATGGATCT GTTTCGGAGGCTGATGGTACTGATACCTCAATTTTCATTTCGCGTGATGAGATGAACCCTGCACTTTCAGGGTTTCCTCGACAAAGTTACACAATGAGAG GGGAAAAACTGCGTCCAGATGTAAGGCCCAACTACCCAATGTTAGTTGCTCAATGGCAATATGCTGTAGCTCGCATGGACAAAGCTCAGGCGTTTGCTTT TAAAGAATTCAAAGAGCGTGGTGGAAATCTTGTAATACCAGCTGATAGGTTTGTGCATGAAGTAGCATTTAAACTATGGAAGGCTCCCAAATATGGGGCT TGA
AA sequence Show only first row Show all	>Lus10003649 pacid=23171429 polypeptide=Lus10003649 locus=Lus10003649.g ID=Lus10003649.BGIv1.0 annot-version=v1.0 MADMPSRSLVLYGDGLGRFVDFSHTHLHSLASKATCGFLSLPPQRPSLSEDERTVREFALLLDSWDTANQSTNNASTPTIADRFMGMKAAVVTNNPSLRS FGGKIGLTVFPFNDVSCESMGLELMSMLGFQEGSVVDISQFDIVFVHKGSGETKDGDKDNRGALDVAFINSLVDGIMHAAEPGSAIGSRLHLSLVMSYGS VSEADGTDTSIFISRDEMNPALSGFPRQSYTMRGEKLRPDVRPNYPMLVAQWQYAVARMDKAQAFAFKEFKERGGNLVIPADRFVHEVAFKLWKAPKYGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11810			unknown protein		Lus10003649 [exp]	0	1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	13.4	0.6951
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	14.1	0.6706
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10011319 [exp]	14.8	0.6513
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	17.2	0.7322
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	20.4	0.6597
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10040113 [exp]	42.1	0.6988
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	52.2	0.6492
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	61.2	0.5996
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	76.3	0.6365
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10036681 [exp]	90.9	0.5878

Compare expression of checked genes

Lus10003649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.