Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14400 351 / 3e-118 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT3G50660 350 / 7e-116 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 276 / 1e-87 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 258 / 1e-80 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G36380 253 / 3e-78 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G30180 245 / 7e-76 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 242 / 9e-75 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G12740 239 / 2e-73 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT1G73340 234 / 3e-71 Cytochrome P450 superfamily protein (.1) AT3G19270 227 / 5e-69 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022298 [exp] 521 / 0 AT5G14400 282 / 3e-94 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10016065 [exp] 404 / 4e-137 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10022299 [exp] 289 / 2e-96 AT3G50660 132 / 3e-36 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10024016 [exp] 287 / 3e-92 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10000647 [exp] 264 / 3e-83 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014850 [exp] 254 / 3e-79 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10034377 [exp] 251 / 2e-78 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10024495 [exp] 251 / 5e-78 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005075 [exp] 249 / 1e-77 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341000 [exp] 521 / 0 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.014G171700 [exp] 418 / 3e-143 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 355 / 4e-118 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 349 / 8e-116 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.008G067500 [exp] 280 / 3e-89 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G156800 [exp] 278 / 2e-88 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.010G189800 [exp] 271 / 1e-85 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 268 / 3e-84 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 266 / 9e-84 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.004G117700 [exp] 256 / 2e-80 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10003650 pacid=23171438 polypeptide=Lus10003650 locus=Lus10003650.g ID=Lus10003650.BGIv1.0 annot-version=v1.0 ATGGCTCATCATCTTCTTCTTCTTCCAACATTTGCCCTCTTTCTAGCCTTGTTCGCCGGAGCTTTACTTGTTCTCCGACGACACAATCATCGCCACCTGA TGATCAGACATAAGTCTCTCCCTGATGGCCACATGGGTTGGCCTTTCATCGGTCAAACTCTCTCCTTCCTCCACCCTCATGGATCCAACTCCATCGGCTC CTTCCTCCAACAGAACTGCGCAAGATATGGGAAAGTGTTTAGGTCGCATCTTTTCGGGTCCCCAGCCATAGTTTCTTGCGACTTAGAGTTCAGCATGTTT GTTCTCCAAAACGAAGGGAAGTTGTTTGAGGCCGACTATCCCAAGGCAATGCATGGAATCCTCGGCGAATTTTCGCTCCTTATGTCCTCCGGGGGGCTTC ACAAGAGGCTTAGAGGGGTGCCGGTGACATTTGCAGCGAGGTCCAAGTCATCCCCTAAATTTCACGCTCACATAGAGAAGATTGCTTACTCCACCATGAA GTCGTGGAAAGGGAAAAATGAGATTGCCTTTCTTGACGAGATGAAGAAGGCAAATGAATTCAGAAAGTACATGAAAGGGTTTATCTCGCTGCCTCTCAAC ATCCCGGGATTAGCTTATGCCAAAGGTGTTAAGGCGAGAGCAAGGCTATCGAGGGTGGTGAAAGGGATAATAAAAGAGAGGAAGGGTAAAACGACGTCGT ACGGAGAGGGAGAGGAAGAGGGAGACTTCTTAGACGAGATACTGTCAAAGCACAGCAGCACGAGGAATATGAACGACGAGGAGATAGTGAGCAGTGTGTT GGACATACTTATGGGTGGTTACGAGACAACCTCCACCCTCATTTCCATTGTTCTCTACTTCCTCCACCGTTCCCCCGCCGCCTTCCACACCTTTAAGGAA GAGCATCAACGTCTCAGGAGGAGCAAACAGAATCGGCATGCCCCCTTGAATTGGGATGACTACCAGAATATGACCTTCACCCACTGTGTGACGCGCGAAG CCGTGAGATGCGGGAATGTGGTGAAGTTCTTACACAGGAAGGCAGTACAAGACGTGGAATTCAAAGGCTACTTCATTCCAGCAGGGTGGAAGGTTCTTCC GATTTTAAGCGGTGCAAATCTGGACCCAGCTCTTCACCATGAAAGCCTGCTGTTTAATCCATGGAGATGGATGGAGGACAAGGAAATAAACAGGAAAGTA ATGGGGTACGGAGGTGGAGCAAGAGTGTGCCCAGGTGCCGATCTCGCTAAAGTCATGGTCGCCTTTTTCCTTCATCATCTTGTCCTCTCCTACACTTGGA AAGTCAAGGAAGACGATGATCACCCAGTGGCTTATCCCTACGTGGAGTTTCGGAATGGTCTTGTTCTGGAGATTGAACCTGAACCATTCCATGTTTAA
AA sequence Show only first row Show all	>Lus10003650 pacid=23171438 polypeptide=Lus10003650 locus=Lus10003650.g ID=Lus10003650.BGIv1.0 annot-version=v1.0 MAHHLLLLPTFALFLALFAGALLVLRRHNHRHLMIRHKSLPDGHMGWPFIGQTLSFLHPHGSNSIGSFLQQNCARYGKVFRSHLFGSPAIVSCDLEFSMF VLQNEGKLFEADYPKAMHGILGEFSLLMSSGGLHKRLRGVPVTFAARSKSSPKFHAHIEKIAYSTMKSWKGKNEIAFLDEMKKANEFRKYMKGFISLPLN IPGLAYAKGVKARARLSRVVKGIIKERKGKTTSYGEGEEEGDFLDEILSKHSSTRNMNDEEIVSSVLDILMGGYETTSTLISIVLYFLHRSPAAFHTFKE EHQRLRRSKQNRHAPLNWDDYQNMTFTHCVTREAVRCGNVVKFLHRKAVQDVEFKGYFIPAGWKVLPILSGANLDPALHHESLLFNPWRWMEDKEINRKV MGYGGGARVCPGADLAKVMVAFFLHHLVLSYTWKVKEDDDHPVAYPYVEFRNGLVLEIEPEPFHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10003650 [exp]	0	1
					Lus10012429 [exp]	2.4	1.0000
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	2.8	1.0000
AT5G48540			receptor-like protein kinase-r...		Lus10015472 [exp]	3.2	1.0000
AT3G05950			RmlC-like cupins superfamily p...		Lus10029010 [exp]	3.5	1.0000
					Lus10007179 [exp]	4.0	1.0000
					Lus10003840 [exp]	4.0	1.0000
					Lus10021548 [exp]	4.7	1.0000
					Lus10022573 [exp]	5.7	1.0000
					Lus10006661 [exp]	7.5	1.0000
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10002416 [exp]	7.6	0.9223

Compare expression of checked genes

Lus10003650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.