Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62600 488 / 4e-174 ATERDJ3B DNAJ heat shock family protein (.1) AT3G08910 155 / 2e-44 DNAJ heat shock family protein (.1) AT5G01390 154 / 8e-44 DNAJ heat shock family protein (.1.2.3.4) AT5G22060 142 / 1e-38 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 140 / 1e-37 ATJ3 DNAJ homologue 3 (.1.2) AT2G22360 103 / 3e-24 DNAJ heat shock family protein (.1) AT5G48030 102 / 4e-24 GFA2 gametophytic factor 2 (.1) AT2G20550 99 / 2e-23 HSP40/DnaJ peptide-binding protein (.1.2) AT2G20560 98 / 5e-23 DNAJ heat shock family protein (.1) AT1G10350 97 / 2e-22 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022297 [exp] 639 / 0 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 587 / 0 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 583 / 0 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10042891 [exp] 148 / 1e-40 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 142 / 1e-38 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10017687 [exp] 135 / 2e-36 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10004109 [exp] 112 / 1e-27 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10023148 [exp] 107 / 2e-25 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 106 / 2e-25 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198000 [exp] 533 / 0 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 528 / 0 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 167 / 6e-48 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 166 / 2e-47 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 165 / 4e-47 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 162 / 8e-46 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.018G034600 [exp] 137 / 2e-37 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 134 / 2e-36 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 107 / 8e-26 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 102 / 6e-24 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003651 pacid=23171423 polypeptide=Lus10003651 locus=Lus10003651.g ID=Lus10003651.BGIv1.0 annot-version=v1.0 ATGGCGCATCAAGGAGCGAAGCTTTTCTTCTTACTATGCGCTCTGTCGTACGCTCTAATCACCATTGCCGGGAAGAGCTATTATGACATATTGCAAGTGG CGAAAGGTGCTTCCGATGATCAGATCAAGCGAGCTTATAGGAAGCTGGCATTGAAGTATCATCCCGATAAGAACCCTGGAAACGATGAAGCCAATAAGCG CTTTGCTGAGATTAGCAACGGTAGACTACTAGATTGGACATTGCAAACAACCCCATCGTACGAGGTGTTGTCCGATAGCGAGAAGAGGAAGATTTATGAT GCTTATGGAGAGGAAGGGCTTAAACAGCATATGGCGGGTGGAGGTCGCGGTGGAGGAATGGACATTCAAAACATTTTTGAGCAATTCTTTGGTAGAGGAG GTCCTCAGGAAGAGGAGGAAGAAAGGATTCCCAAAGGCGATGATGTCATTGTGGATCTTGATGCTAGCCTGGAGGATCTATACATGGGCGGTTCGGTGAA GGTATGGAGAGAAAAGAATGTTATAAAACCGGCCCCGGGAAAGAGACGCTGTAACTGCAGAAATGAGGTCTATCACAGGCAAATTGGTCCAGGGATGTTT CAGCAGATGACAGAGGAGGTCTGTGATCAATGCCAAAATATCAAACATGAAAGGGAAGGTTATTCGCTCACAGTTGATATCGAGAAAGGAATGCAAGATG GTCAAGAGGTAGTTTTCTACGAAGATGGCGAACCCAAGGTAGATGGAGAACCTGGAGATTTAAAGTTCCGTATTCGGACTTCACCTCATGACGTCTTCAC AAGGAAAGTCAATGACTTGCACACAACAGTCACCATCACACTGGTTCAAGCACTCGTTGGGTTTGAGAAGAAAATGAAGCACCTCGACGAACATCAAGTT GACATCAGCACTCAGGGAATCACAAAGCCGAAAGAAGTAAGGAAGTTCAAAGGAGAAGGGATGCCGTTGTATGCAAGCAATAAGAAAGGCGACCTATACG TAACATTCGAGGTACTGTTCCCTAGCTCATTGACAGAGGAACAGAAGACAAAGATCAAGGACATTCTTGGCTAG
AA sequence Show only first row Show all	>Lus10003651 pacid=23171423 polypeptide=Lus10003651 locus=Lus10003651.g ID=Lus10003651.BGIv1.0 annot-version=v1.0 MAHQGAKLFFLLCALSYALITIAGKSYYDILQVAKGASDDQIKRAYRKLALKYHPDKNPGNDEANKRFAEISNGRLLDWTLQTTPSYEVLSDSEKRKIYD AYGEEGLKQHMAGGGRGGGMDIQNIFEQFFGRGGPQEEEEERIPKGDDVIVDLDASLEDLYMGGSVKVWREKNVIKPAPGKRRCNCRNEVYHRQIGPGMF QQMTEEVCDQCQNIKHEREGYSLTVDIEKGMQDGQEVVFYEDGEPKVDGEPGDLKFRIRTSPHDVFTRKVNDLHTTVTITLVQALVGFEKKMKHLDEHQV DISTQGITKPKEVRKFKGEGMPLYASNKKGDLYVTFEVLFPSSLTEEQKTKIKDILG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	0	1
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	5.5	0.8079
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10026498 [exp]	7.5	0.7279
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015160 [exp]	9.1	0.8364
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	9.2	0.8148
AT1G70140		ATFH8	formin 8 (.1)		Lus10004244 [exp]	15.7	0.6677
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	16.3	0.8250
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	16.5	0.7189
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	20.0	0.8165
AT3G57620			glyoxal oxidase-related protei...		Lus10012386 [exp]	20.8	0.7243
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	23.2	0.7111

Compare expression of checked genes

Lus10003651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.