Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25300 197 / 5e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 197 / 1e-60 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 194 / 9e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 186 / 1e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 183 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 129 / 1e-34 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 111 / 3e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 109 / 2e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 107 / 8e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 104 / 3e-25 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022292 [exp] 285 / 7e-95 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 227 / 5e-72 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10026173 [exp] 187 / 8e-57 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011985 [exp] 176 / 2e-52 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10011980 [exp] 173 / 1e-51 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 173 / 2e-51 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011981 [exp] 172 / 3e-51 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10015645 [exp] 160 / 2e-48 AT5G20630 98 / 4e-33 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10040112 [exp] 163 / 2e-47 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381700 [exp] 226 / 6e-72 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 215 / 7e-68 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 188 / 3e-57 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 181 / 2e-54 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G022800 [exp] 144 / 1e-40 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.001G355200 [exp] 137 / 7e-38 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G023600 [exp] 129 / 1e-34 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 124 / 5e-33 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 117 / 2e-30 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 108 / 6e-27 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003652 pacid=23171428 polypeptide=Lus10003652 locus=Lus10003652.g ID=Lus10003652.BGIv1.0 annot-version=v1.0 ATGCTGCTACTCCGCACCCGCCGCGGATTTCTGCGTAGCCGATCTATCTCTCCAAACCGCATCAGGCTACACGTGCAAGGACCCCACCAAAGCCACCGCC GCCGACTTCCTCTTTACCGGAATATCCCAACCGGGCAACACCACCAACCTCTTCAGGGAAGTTGCTGCCCTGGCATCCGTCCGGCAGTTCCCGGCCCTGA ACGGGCTGGGAATCTCCATGGCCCGCATCGTTTCGCTCTCGGCGGGGTGATCAAGCTGCACACCCACCCGGTGGCTACCGAGATAGCCTACCTGATTGAG GGGTCTGTCACGGTGGGATTCGTCACGGCCGGGACGAACAAGGTGTACCTGAACAAGATCAATAAAAAGCTGCTCGATGAATCCTCGATGGATTCCGAGA TTCAGAAGCTCCACTCTGCCTGTAAAGATTGGGGCTTTTTCCAGTTGGTGAATCGCGGAGTGAGCTCTGCTCTGGTAGAGGACATGAAAACACAGGTTCA GGAATTCTTCAACCTTCCAATGGAAGAAAAGAAGAAGTTATGGCAATATCCAGGCGAAGTGGAAGGGTTCGGTCAATCATTCGTTGTGTCCGAGGAGCAG AAACTTGATTGGGGAGACATGCTTTCCTTCTCACTCACCCTCTCCACCACAGAAAGCCTCACTTGCTCCCAAACCTTCCACTTCCTTTCAGGCAAGGTTC TCGACCAAATGTCCAAAGCATTAAACATGAAGCCAGAGGAAATGAGGGACATGTTCTCAGGGGACATAAGACAGACAACGAGGATGAACTACTATCCTCC GTCCCCTCAGCCGAACAAAGTCATCGGCTTGACCCCTCATTCCGACGGAACAGGGATAACAATCCTGTTACAAGTCAACGAAGTCGGAGGCTTGTAG
AA sequence Show only first row Show all	>Lus10003652 pacid=23171428 polypeptide=Lus10003652 locus=Lus10003652.g ID=Lus10003652.BGIv1.0 annot-version=v1.0 MLLLRTRRGFLRSRSISPNRIRLHVQGPHQSHRRRLPLYRNIPTGQHHQPLQGSCCPGIRPAVPGPERAGNLHGPHRFALGGVIKLHTHPVATEIAYLIE GSVTVGFVTAGTNKVYLNKINKKLLDESSMDSEIQKLHSACKDWGFFQLVNRGVSSALVEDMKTQVQEFFNLPMEEKKKLWQYPGEVEGFGQSFVVSEEQ KLDWGDMLSFSLTLSTTESLTCSQTFHFLSGKVLDQMSKALNMKPEEMRDMFSGDIRQTTRMNYYPPSPQPNKVIGLTPHSDGTGITILLQVNEVGGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10003652 [exp]	0	1
AT1G29460			SAUR-like auxin-responsive pro...		Lus10020430 [exp]	6.0	0.8385
					Lus10022068 [exp]	7.6	0.8215
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	11.4	0.7998
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	11.7	0.6428
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10014557 [exp]	13.1	0.7996
					Lus10008653 [exp]	15.2	0.5937
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	15.8	0.7820
					Lus10022805 [exp]	17.3	0.7820
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	18.7	0.7820
					Lus10011962 [exp]	20.0	0.7820

Compare expression of checked genes

Lus10003652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.