Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35850 605 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 82 / 1e-16 RPF2 rna processing factor 2 (.1) AT5G16640 80 / 9e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 79 / 3e-15 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 79 / 3e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 76 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 74 / 5e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G37230 74 / 1e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16390 73 / 2e-13 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53700 72 / 5e-13 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022296 [exp] 843 / 0 AT4G35850 598 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038788 [exp] 78 / 4e-15 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 77 / 8e-15 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023863 [exp] 77 / 1e-14 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10034421 [exp] 75 / 5e-14 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 75 / 5e-14 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 75 / 6e-14 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 72 / 3e-13 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041421 [exp] 72 / 4e-13 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341400 [exp] 634 / 0 AT4G35850 570 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 86 / 1e-17 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G019000 [exp] 82 / 3e-16 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G025600 [exp] 80 / 7e-16 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G081700 [exp] 78 / 4e-15 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.010G014100 [exp] 78 / 6e-15 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G166200 [exp] 75 / 3e-14 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G066600 [exp] 75 / 4e-14 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G166001 [exp] 75 / 4e-14 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G105600 [exp] 75 / 5e-14 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003653 pacid=23171430 polypeptide=Lus10003653 locus=Lus10003653.g ID=Lus10003653.BGIv1.0 annot-version=v1.0 ATGAACTTCCTCATTCGATCCATCTCCGGTCCTCGGACGACGGTTCTCCGAACATCGGGCCGTCGTTACTTTGCTTCCGCTGCCGCTGCTTCACCGGAGG AGTACGCCAAGCGGAATTACGCAAACAATGTGGCCGAGTATAACACCGTCCTTGGTTCCCTCACTTCTCAACGCAGGGCTTACTTGTTGAGAGATGTGTA TGATGATATGGTGCTCGATGGAGTTCAGCCGGGGCGAGATGTTTTCCATTCGTTGATTGTTGGAACCATGAAAGGCGCTCGCTTGCAGGATGCTTTCTAT TTCAGAGATGAAATGAAAGCTATGGGCTTGGTTCCTGATGTAGCATTGTACAATTTCTTAATTTCAACTTGTGGGAAGTGCAAGAATTCCAACCAAGCGG TTCAGATTTTTGAAGAAATGAAGCGGTATGAAGTGAAGCCAAATGGACAAACCTATGTCTGTTTGCTTAATGCATGTGCAGCAGCTGGTCGGGTAGACCG AGTGTATGCAATCGTCCGTGATATGACTGCTGCTGCTGCTGGCTTGAACAAATTCTGCTATGCTGGACTGATAACTGCCCATCTGAACAAGACACCTCTT GGAGATGATACAGCCAGCAAGATAGTTGAGTTAGTTGAGCAGTCAAAAGGATGGTCATCTGTTGATGGAGCAACTTATGCTGCTGAAAATGTGATGAGGG ATCTGTCATCGGAGGAATTGTATAATTTGCCAACAGCTGAATATGTTCGTAGACGTGGAGGTTTCTTGAATAAGAATCTTACTGTGTATCATGTTGCACT TTATGCCTGTGCTGAACTAAAAAATGTAGAGGCAATGGAAACTCTAATGGGAATGCTTCAGAAGGATGGGCAGTCTCCTGATGTCTTCATTCTGATGCAA ACAATGAGGTGCCATCTACAGTCCGGTGACCTGGATCGCGGTCTTAGTATCTTCGAAGATTACATGAATTCTAGCAAGCCTCCAATGATTGAGCTCTTTG TGACACTAATAGAGGGAGCCATGTTAGGATATACTCCCAAGGGAATGCAACTTGCACAAGATACTCTGGTGAAAATGACTGAAAATAACTTGTTTTTGAA TCCTAAAATCGGCAATGACCTCCTCCTTTTAGCTGCTGGCGAAAAGACTGGTGGGTACACAAGTGCAAATTACATATGGGACTTGATGCAAGCTCGTAAC TTAACACCCACTTTCCTTGTGGTGGAAGCATACTACAATGGTCTGAAAGGTCGAGAGGTACCTGAAGATGATCCAAGGCTATTACTTGTGTCACGAGCTT ACAACAAACTGCGTTCGAGACTGGGGCCAAGAGGAGGCAGCATGAGAACAGCTGACTGA
AA sequence Show only first row Show all	>Lus10003653 pacid=23171430 polypeptide=Lus10003653 locus=Lus10003653.g ID=Lus10003653.BGIv1.0 annot-version=v1.0 MNFLIRSISGPRTTVLRTSGRRYFASAAAASPEEYAKRNYANNVAEYNTVLGSLTSQRRAYLLRDVYDDMVLDGVQPGRDVFHSLIVGTMKGARLQDAFY FRDEMKAMGLVPDVALYNFLISTCGKCKNSNQAVQIFEEMKRYEVKPNGQTYVCLLNACAAAGRVDRVYAIVRDMTAAAAGLNKFCYAGLITAHLNKTPL GDDTASKIVELVEQSKGWSSVDGATYAAENVMRDLSSEELYNLPTAEYVRRRGGFLNKNLTVYHVALYACAELKNVEAMETLMGMLQKDGQSPDVFILMQ TMRCHLQSGDLDRGLSIFEDYMNSSKPPMIELFVTLIEGAMLGYTPKGMQLAQDTLVKMTENNLFLNPKIGNDLLLLAAGEKTGGYTSANYIWDLMQARN LTPTFLVVEAYYNGLKGREVPEDDPRLLLVSRAYNKLRSRLGPRGGSMRTAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	0	1
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10004414 [exp]	1.4	0.7984
AT4G15640			unknown protein		Lus10012810 [exp]	6.9	0.7995
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	12.0	0.7304
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	13.3	0.6897
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	13.5	0.7048
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10038846 [exp]	17.2	0.7168
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	18.2	0.7555
AT4G25740			RNA binding Plectin/S10 domain...		Lus10014966 [exp]	21.0	0.6793
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	21.4	0.7207
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	26.2	0.6861

Compare expression of checked genes

Lus10003653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.