Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01650 376 / 2e-127 RGLG1 RING domain ligase1 (.1) AT5G14420 370 / 2e-125 RGLG2 RING domain ligase2 (.1.2.3.4) AT1G67800 338 / 3e-113 Copine (Calcium-dependent phospholipid-binding protein) family AT1G79380 295 / 8e-97 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G63970 290 / 1e-95 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT5G07300 86 / 8e-18 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 85 / 1e-17 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 85 / 1e-17 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT1G08860 80 / 4e-16 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G14410 59 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022294 [exp] 483 / 4e-170 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 428 / 5e-149 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 426 / 2e-147 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 364 / 4e-124 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10036879 [exp] 360 / 5e-121 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 351 / 4e-118 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10033043 [exp] 330 / 8e-110 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10006463 [exp] 322 / 3e-107 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10020885 [exp] 305 / 3e-100 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342200 [exp] 411 / 9e-142 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 366 / 9e-124 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 363 / 1e-122 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.012G090100 [exp] 362 / 1e-122 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 339 / 5e-114 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 321 / 3e-107 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 318 / 2e-105 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.005G065700 [exp] 308 / 9e-102 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.008G081300 [exp] 299 / 2e-98 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.007G103700 [exp] 289 / 4e-95 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10003654 pacid=23171419 polypeptide=Lus10003654 locus=Lus10003654.g ID=Lus10003654.BGIv1.0 annot-version=v1.0 ATGGGAGTATCTCTATCTTATGGTCAATCCTATGGCCAAGAGATCAGCTATGGCTATAGCTATCCACCCAATCAACCTTCCACACTGCAAAACTACCATT CATCTCCTCAACACACTGATGGTGGTGATACAAGGCGGCTTGACAGGAAGTATTCAATAATCACTGATGACTTTAAATCGTTAGACCAGGTAACAGAAGC TCTTGCGCGTGCAGGACTTGAATCTTCAAATCTCATTGTTGGAATTGACTTTACAAAGAGCAATGAGTGGACATGTACGAAGTCGTTTGGCAGAAACAGT TTGCATCACATTGGAGACGGCTTTAATCCCTACGAGCAAGCAATATCCATCATTGGGAAAACTTTAGTTGCCTTTGATGAGGATAACTTGATTCCCTGTT TTGATTTGGAGATGGTAGGCCTGGTCTCAGCTACGACACATGATCAGGATGTCTTCAGTTTCTATCCGGAAGAGAGGCCCTGCAATGGATTTAAGGAAGT TTTGAGTCGGTACCAACCTATTGTTCCAAATCTACGACTTGCAGGACCAACATCTTTTGCACCAATCATTGAGAAGTCGATGGCCATTGTTGAGGAGAGC AGTGGTCAATACCATGTATTGTTGATTATAGTAGATGGTCAGGTTACTAGAAGTGTTGATATTGAACATGGGCAGCTCAGTCAACAGGAGCAGAAGACGG TTGGTGCCATAGTAGAGGCAAGCAAGCTTCCCTTATCTATTGTTTTGGTGGGGGTTGGGGATGGACCATGGGACATGATGAAGGAGTTCGATGGTAACAT TCCTGCTAGGGATTTTGATAATTTCAGGAGGATGCTCTCCAATTATCAAAAGCTTCAAAAAGATGTGGAGGAGGAGGAAGATGGAGGGGTTGGTAGTAGG AGTATCAACTGGTTCAAGTTCAGAAGGTTTCAGTGGAGGAGGAGATCGAGGAGAAGAAGAAGACCATCTTCAGCATCATCTTCATTCATTAGGCTTAAAG TTTCGAGCTTGGTGAGGAGGAGGAAAGATATGATGAAGATGTTCAGGGTTTCGATTAGGAATGTGTTGAAGAGATTGAAGGAAGGTCAAGATCACTTTGG CGATCTTTTTGCTGGAAACTATCTCTTCTTGCAGATCAATCCTACTTCCTTCAAGTCCTTGCAGAAATCTTACACTCTCCCTCCTCGTCCTGCTTTCTTA ACTTGA
AA sequence Show only first row Show all	>Lus10003654 pacid=23171419 polypeptide=Lus10003654 locus=Lus10003654.g ID=Lus10003654.BGIv1.0 annot-version=v1.0 MGVSLSYGQSYGQEISYGYSYPPNQPSTLQNYHSSPQHTDGGDTRRLDRKYSIITDDFKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTCTKSFGRNS LHHIGDGFNPYEQAISIIGKTLVAFDEDNLIPCFDLEMVGLVSATTHDQDVFSFYPEERPCNGFKEVLSRYQPIVPNLRLAGPTSFAPIIEKSMAIVEES SGQYHVLLIIVDGQVTRSVDIEHGQLSQQEQKTVGAIVEASKLPLSIVLVGVGDGPWDMMKEFDGNIPARDFDNFRRMLSNYQKLQKDVEEEEDGGVGSR SINWFKFRRFQWRRRSRRRRRPSSASSSFIRLKVSSLVRRRKDMMKMFRVSIRNVLKRLKEGQDHFGDLFAGNYLFLQINPTSFKSLQKSYTLPPRPAFL T

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10003654 [exp]	0	1
AT5G06440			unknown protein		Lus10013601 [exp]	6.3	0.7183
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	6.5	0.7354
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	14.8	0.7345
AT4G24700			unknown protein		Lus10017951 [exp]	14.9	0.7374
					Lus10000810 [exp]	21.0	0.6397
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	25.1	0.7083
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	34.5	0.6741
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10005483 [exp]	37.5	0.6517
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	43.1	0.6761
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	43.9	0.6452

Compare expression of checked genes

Lus10003654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.