Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14430 849 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G04430 783 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 782 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 778 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G10200 486 / 2e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 485 / 9e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 478 / 1e-161 Putative methyltransferase family protein (.1) AT1G77260 474 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 469 / 4e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 470 / 1e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022291 [exp] 1161 / 0 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 790 / 0 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021177 [exp] 699 / 0 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10038973 [exp] 498 / 8e-171 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 495 / 9e-170 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 471 / 8e-160 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 467 / 2e-157 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 466 / 3e-157 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 464 / 2e-156 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342300 [exp] 971 / 0 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036800 [exp] 780 / 0 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 766 / 0 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G043600 [exp] 485 / 1e-165 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 483 / 5e-164 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 470 / 6e-159 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 466 / 1e-157 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 459 / 3e-155 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 449 / 2e-151 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 450 / 4e-151 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003656 pacid=23171441 polypeptide=Lus10003656 locus=Lus10003656.g ID=Lus10003656.BGIv1.0 annot-version=v1.0 ATGAAGCAGAAAAGCGACCAACTTCGCACTTCCAAGCTCATCACTCACCTTCTCCTCATTCTCATCCTCCTCCTCGGCCTCCTCTGTTTGTTTTACGCTT CTTCCTTTGCGCCCGGATCCGACCCGGATTTCCTCCGCCACGACCTTAGTTCATCCTTCCATGGTACCCGAGACTTCGACGATGACTTACTCCAGGATCC GCAAGTGCGCAGAAGCATACCCATCTGTGACATGAAGTACTCTGAGCTCATACCTTGCTTGGATAGAGAGCTCATTTACCAGATGAGGTTGAAGCTCAAC TTGTCCTTGATGGAGCATTATGAGCGTCACTGTCCGCCACCACAGCGCCGCCTCAATTGTCTCATTCCGCCGCCTGCTGGCTACAAGGTTCCAATCAAAT GGCCAGAGAGTAGAGATGAAGTGTGGAAGGCTAATATCCCACATACCCACTTGGCGAAGGAGAAATCTGATCAAAACTGGATGGTTGTCAATGGCGATAA GATCAATTTCCCTGGTGGAGGAACCCATTTCCATTATGGCGCTGACAAGTACATTGTTTCCCTCGCTAGGATGCTTAAGTTCCCAAATGAAAGACTTCAC AATGGCGGGAACGTCAGGAGTGTTCTCGACGTGGGTTGTGGGGTTGCGAGTTTCGGGGCATATCTTCTTCAGCATAGCATCATAGCCATGTCCCTTGCAC CGAACGATGTTCATCAGAACCAAATACAGTTTGCATTGGAGAGAGGAATTCCATCCACTCTCGGTGTTCTCGGTACCAAGAGGCTTCCTTATCCAAGTAG ATCATTCGAATTGGCTCATTGTTCGCGGTGTCGGATTGATTGGCTCCAGAGGGATGGAATCCTGCTGCTAGAACTTGATAGGGTTCTAAGACCAGGAGGT TATTTCGCATACTCGTCTCCAGAAGCTTATGCTAAGGATCCAGAGAATCAACGGATCTGGAATGCTATGCATGATCTTCTGAAAAGGATGTGCTGGAGGG TTGCTTCAAAGAAAGACCAAACTGTAATTTGGCAAAAGCCGCTGAGCAATAGTTGTTATTCGAGAAGAGAACCCGGGACTCAGCCTCCTTTGTGTGGTTC GGGTGATGATGCTGATGTAACATGGAATGTGGACATGAAGGCCTGCATTTCCCCATACTCAGCGCAGATGAACAGGGAGAAGGGGACTGGACTGGTTCCA TGGCCGCAAAGGCTTATTGCAGCACCTCCTCGATTGGAAGACATTGGTGTTGGTGCTGAAGAGTTCCATGAGGATACTCGGATATGGAAGTTTAGGGTGA ATGAGTACTGGAATCAGTTGAAATCCGTTGTAAGGAAGAGTTACTTCAGAAATGTGATGGATATGAATGCAAATCTCGGGGGTTTTGCTGCTGCACTCAA AGATACTGATGTCTGGGTGATGAATGTTGCTCCTGCTAATGTTTCTGCTCGACTGAAGATCATTTACGATCGTGGCTTAATCGGAACAGTTCATGACTGG TGCGAAGCATTCTCCACGTACCCAAGGACGTACGATCTTCTTCATGCATGGGCTGTATTCTCAGAGATTGAAGAGAGGGGGTGCAGTGCAGAGGATTTAC TTATCGAAATGGATAGGATACTGAGGCCTGAAGCATTCGTCATCGTAAGAGACAAGCCTTCGATTGTTAACTACATCGTGAAGTCCTTACCAGCCTTGAA GTGGGATCGATGGGTGTCAGAGGTTGAGCCGAGCACTGATGCTCTCTCGTTGGGCGAAGAACGTGTTCTAATCGCGAGGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10003656 pacid=23171441 polypeptide=Lus10003656 locus=Lus10003656.g ID=Lus10003656.BGIv1.0 annot-version=v1.0 MKQKSDQLRTSKLITHLLLILILLLGLLCLFYASSFAPGSDPDFLRHDLSSSFHGTRDFDDDLLQDPQVRRSIPICDMKYSELIPCLDRELIYQMRLKLN LSLMEHYERHCPPPQRRLNCLIPPPAGYKVPIKWPESRDEVWKANIPHTHLAKEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIVSLARMLKFPNERLH NGGNVRSVLDVGCGVASFGAYLLQHSIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGG YFAYSSPEAYAKDPENQRIWNAMHDLLKRMCWRVASKKDQTVIWQKPLSNSCYSRREPGTQPPLCGSGDDADVTWNVDMKACISPYSAQMNREKGTGLVP WPQRLIAAPPRLEDIGVGAEEFHEDTRIWKFRVNEYWNQLKSVVRKSYFRNVMDMNANLGGFAAALKDTDVWVMNVAPANVSARLKIIYDRGLIGTVHDW CEAFSTYPRTYDLLHAWAVFSEIEERGCSAEDLLIEMDRILRPEAFVIVRDKPSIVNYIVKSLPALKWDRWVSEVEPSTDALSLGEERVLIARKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10003656 [exp]	0	1
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	31.7	0.6412
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10027652 [exp]	63.0	0.6233
AT2G38710			AMMECR1 family (.1.2)		Lus10029754 [exp]	228.2	0.5957

Compare expression of checked genes

Lus10003656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.