Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31400 882 / 0 GUN1 genomes uncoupled 1 (.1) AT1G74850 263 / 2e-76 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 248 / 4e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 219 / 3e-61 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 201 / 9e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 203 / 4e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT3G06920 202 / 8e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 198 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 197 / 1e-53 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT2G18940 197 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022290 [exp] 1399 / 0 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10033127 [exp] 268 / 5e-78 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 244 / 2e-69 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 241 / 8e-69 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042068 [exp] 208 / 5e-57 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018075 [exp] 206 / 2e-56 AT2G41720 1020 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10020002 [exp] 201 / 2e-54 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 200 / 4e-54 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 194 / 3e-53 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G118500 [exp] 1006 / 0 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.002G193900 [exp] 995 / 0 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 273 / 4e-80 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.001G297300 [exp] 235 / 2e-66 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 234 / 3e-66 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 201 / 6e-56 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G166200 [exp] 204 / 9e-56 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 200 / 1e-55 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 202 / 2e-55 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G045000 [exp] 199 / 4e-55 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003657 pacid=23171434 polypeptide=Lus10003657 locus=Lus10003657.g ID=Lus10003657.BGIv1.0 annot-version=v1.0 ATGCTCCGGGAGCTTGGCAACAATGGGGATTGGGGGAGGGCACTGTGCTGCTTCGAGTTCGCCATCAAGAGGGAAAAAAGGAAGCTGGGGAAGGGGAAAT TAGCGAGCTCCATGATCAGCACGCTAGGTAGGTTGGGTAAAGTCGAGCTTGCCAGGAGTGTTTTCGAGACTGCTTTTAACCAAGGGTATGGAAACAATGT CTACACTTTCTCTGCTTTGATTAGTGCTTATGGGAAGAGTGGCCACTGTAATGAAGCTGTTCAGGTCTTGGAATCGATGAAATACTACGGATTGAAGCCG AATTTGGTTACTTACAATGCTGTCATTGATGCCTGTGGGAAAGGAGGAGTGGAGTTTAGCAAACTTGTAGACATTTTCAACCTTATGTTGAAGGATGAGG TGCATCCGGATAGGATAACTTATAATACACTTCTGGCTGTGTGTAGCAGAGGAGGCTTCTGGGACACTGCGAAACGTTTATTTAGTGAAATGGAAGGTAG AGGGATTGAACGGGATTTGCATACTTACAACACCCTTTTGGATGCGGCTTGTAAAGCTGGGCAATTGGATGTTGCTTCTCAAATCATGTCTGAGATGCCT ACAAAGAAGATGTTCCCCAATGTGGTTACTTATAGTATTATGATTGATGGCTATGCTAAGGCTGGTAGATTGAACGACGCCCTTTTGTTGTTTAATGAAA TGAAGCTTCAGGGTATTGAGTTGGATAGGGTTCTCTATAATACTTTGCTTTCTGTTTATGCCAACCTTGGTAAGCTCGAGGAGGCCTTGGACGTGTACAA GGAGATGCGAGCTTTCGGGTTCGGAAGAGATGTTGTTACTTATAATGCACTCATAGCTACGTTTGGGAAGAAGTGCAAGTATGATGAGGTGAGGGGAGTG TTTGAAGACATGAAACTGCAACGCCTGTCGCCAAACTTGGTTACGTACTCGACTTTGATTGATGTGTATTCTAAAGGCGGTTTCTATAATGAAGCCATGG AAGCATTTAGGGATCTGAAACTAGCAGGATTTGAGGCTGACGTAGTTCTCTACAGTGCACTTATTAATGTGTTATGCGTAAATGGATTTGTTGAAACTGC AGTCTCTTTGCTGAATGAGATGACAAAGGCGGGTACCAGACCTAATGTGGTCACTTACAACTCTATCATCAATGGTTTTGTCCTGTCATTTGATTCTGAA TCTCTGGCTAGTGATGCCGGGGAAACCAATGAGTTGCAGCTTGGCACTACGCAGCCACTAACCATCAAGGAAGTTACCCAAGGGGAGATGATGGAAAATG GGGATAACAAGATAATGAAAATATTTGGCCAGCTTGCAGCAGAAAAGACTGGTCAGTCAAAGAGCGGAGGCAGGAATGAACTGTTGTGCATTTTGGGACT CTTCCGCAAAATGCATGAGCTGAAAATCAGACCAAATGTCGTGACTTTTTCAGCCATCTTAAATGCTTGCAGCCGTTGTAATTCGTTTGAAGATGCCTCG GCTTTACTGGAGGAGCTACGCACATTCGATAATGAGATATATGGTGTAACTCATGGCCTCCTGATGGGTTATAGGGGAAATTCTTGGTTGCAGGCATTGT CACTCTTTGATGAAATGAAATCGCTGGACATTCCAACCGCATCTGCCTTCTATAATGCACTAACAGACGTGTTATGGCATTTCGGACAGAAGCGCGGCAC CCAGCTAGTTGTACTTGAAGGAAAACGTAGGCAGGTATGGGAGACTGTGTGGTCAGACTCTTGCTTAGATCTGCATTTGATGTCCTCTGGTGCTGCTCGA GCAATGGTCCACTCCTGGTTGCTAGACATTCGCTCAATTGTATTCGAAGGCAGGGAACTGCCGAAATGGTTGAACATTCTGACCGGATGGGGCAAACATA GTAAAGTTGTAGGGAACAGTGCACTAAAACGAGCCGTTGAGGGTCTTCTAACGCAGATGGGAGCACCATTCCAGTTGGAAAAGTGCAATTTGGGTAGGTT TACATCATCAGGAGCAGTTGTTTCTGCATGGCTAAGAGAACCCAATGCGTTGAAAGTTCTTGTCCTAAATGACCTGAGATCAGGTGAAGCTGCTTCTGCT GCTGAGATGCAATTGGTTCCATTGTAG
AA sequence Show only first row Show all	>Lus10003657 pacid=23171434 polypeptide=Lus10003657 locus=Lus10003657.g ID=Lus10003657.BGIv1.0 annot-version=v1.0 MLRELGNNGDWGRALCCFEFAIKREKRKLGKGKLASSMISTLGRLGKVELARSVFETAFNQGYGNNVYTFSALISAYGKSGHCNEAVQVLESMKYYGLKP NLVTYNAVIDACGKGGVEFSKLVDIFNLMLKDEVHPDRITYNTLLAVCSRGGFWDTAKRLFSEMEGRGIERDLHTYNTLLDAACKAGQLDVASQIMSEMP TKKMFPNVVTYSIMIDGYAKAGRLNDALLLFNEMKLQGIELDRVLYNTLLSVYANLGKLEEALDVYKEMRAFGFGRDVVTYNALIATFGKKCKYDEVRGV FEDMKLQRLSPNLVTYSTLIDVYSKGGFYNEAMEAFRDLKLAGFEADVVLYSALINVLCVNGFVETAVSLLNEMTKAGTRPNVVTYNSIINGFVLSFDSE SLASDAGETNELQLGTTQPLTIKEVTQGEMMENGDNKIMKIFGQLAAEKTGQSKSGGRNELLCILGLFRKMHELKIRPNVVTFSAILNACSRCNSFEDAS ALLEELRTFDNEIYGVTHGLLMGYRGNSWLQALSLFDEMKSLDIPTASAFYNALTDVLWHFGQKRGTQLVVLEGKRRQVWETVWSDSCLDLHLMSSGAAR AMVHSWLLDIRSIVFEGRELPKWLNILTGWGKHSKVVGNSALKRAVEGLLTQMGAPFQLEKCNLGRFTSSGAVVSAWLREPNALKVLVLNDLRSGEAASA AEMQLVPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	0	1
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	6.2	0.7676
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	6.2	0.7482
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026480 [exp]	6.9	0.6906
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	8.7	0.7625
AT5G20950			Glycosyl hydrolase family prot...		Lus10013390 [exp]	12.0	0.6605
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	14.7	0.7375
AT4G34770			SAUR-like auxin-responsive pro...		Lus10042376 [exp]	17.5	0.7016
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	17.8	0.7360
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	18.3	0.7179
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	19.4	0.7272

Compare expression of checked genes

Lus10003657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.