Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40570 181 / 4e-57 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2) AT5G14440 163 / 3e-49 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022288 [exp] 354 / 7e-124 AT5G14440 205 / 7e-66 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342400 [exp] 264 / 6e-89 AT5G40570 197 / 2e-63 Surfeit locus protein 2 (SURF2) (.1), Surfeit locus protein 2 (SURF2) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [flax] [poplar] DoxD-like PF05477 [flax] [poplar] SURF2 Surfeit locus protein 2 (SURF2)
Representative CDS sequence Show only first row Show all	>Lus10003658 pacid=23171425 polypeptide=Lus10003658 locus=Lus10003658.g ID=Lus10003658.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGAAGAGATGACCGGGAAAGAAGGAGAAAACCTGCTTGGTTCGCCTTCATTCTCTGAGCTCGAAAACGGAAGGTTCAAGTGCGTTGAGA CGGGGCATGAAGTTCTGGACAAAGACAAGGAATCTTATTCGCAAAGCAAGAAGTGCCGTTTGGGTCTCATCGACCATGCTCTCTCCAACAAGAAACCTCC TCTCAACATGTTCAAGCAGGACCCTCTCAACAGGTCCAAATTGGTTTGTAAGTTGACTGGGGATACAGTGAATAAGTCCGAAGAGCATATCTGGAAGCAC ATCAACGGCAGACGATTTCTCAACAAATTAGAGCAAAAAGAAACTGGGAAAGTGGTTCCAAATGGAAAAGCAGTAGAAGAAAAAGGAAAGAAGGGAGAAG GAGATGAGGAAGACAGTGAGAAGGAGGGGGGGAAGAAGAGGAAAAAGAAAAAGAAGAAGAAGAAGGCCAAGAGTGTTGAGGAAATTGTTACTGAGATTAG GGATACTCCTGATGGCGATGGGGAGACTGACTCCGAGGAAGCTGATTTCTGGGTACCCCCTGTTGGTGACCGCTGGGATTTCGATGATGGAGCCGATCGC TGGAGTTCTGACGATGAAGGACTCGGAGCAGATGATGCAGTTGAAGATGTTAGCAAAGATTCCGAGGATCTCTCTACCCGGACAAAGAGAATGTCGATTG AAATAGGGCCGAGCAGTCATGCATCCAGAAAGAAGAAGAGTAAAAAGAACCCTAAACCCTAG
AA sequence Show only first row Show all	>Lus10003658 pacid=23171425 polypeptide=Lus10003658 locus=Lus10003658.g ID=Lus10003658.BGIv1.0 annot-version=v1.0 MAEEEEMTGKEGENLLGSPSFSELENGRFKCVETGHEVLDKDKESYSQSKKCRLGLIDHALSNKKPPLNMFKQDPLNRSKLVCKLTGDTVNKSEEHIWKH INGRRFLNKLEQKETGKVVPNGKAVEEKGKKGEGDEEDSEKEGGKKRKKKKKKKKAKSVEEIVTEIRDTPDGDGETDSEEADFWVPPVGDRWDFDDGADR WSSDDEGLGADDAVEDVSKDSEDLSTRTKRMSIEIGPSSHASRKKKSKKNPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	0	1
AT1G20580			Small nuclear ribonucleoprotei...		Lus10030747 [exp]	1.0	0.8704
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	2.4	0.8236
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	2.6	0.7936
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	4.0	0.8193
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	4.2	0.8207
AT1G27435			unknown protein		Lus10041533 [exp]	5.5	0.7963
AT1G03760			Prefoldin chaperone subunit fa...		Lus10017711 [exp]	5.7	0.7337
AT5G53650			unknown protein		Lus10032946 [exp]	5.9	0.8055
AT5G24165			unknown protein		Lus10014921 [exp]	6.3	0.7858
AT5G44710			unknown protein		Lus10001221 [exp]	9.4	0.7229

Compare expression of checked genes

Lus10003658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.