Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27470 537 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 508 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 505 / 9e-180 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G08040 492 / 9e-175 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 489 / 6e-174 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT3G26440 481 / 3e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G24570 456 / 1e-160 Protein of unknown function (DUF707) (.1) AT4G12840 279 / 6e-91 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 251 / 2e-80 Protein of unknown function (DUF707) (.1) AT1G61240 244 / 7e-77 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022287 [exp] 718 / 0 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10032090 [exp] 645 / 0 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 520 / 0 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 519 / 0 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10035229 [exp] 492 / 1e-175 AT1G67850 452 / 1e-159 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10041316 [exp] 491 / 8e-174 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10016095 [exp] 488 / 9e-173 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10021463 [exp] 487 / 1e-172 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10037396 [exp] 492 / 9e-163 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G065200 [exp] 586 / 0 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 535 / 0 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 523 / 0 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 485 / 3e-172 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.014G175800 [exp] 273 / 5e-89 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.019G053000 [exp] 265 / 2e-85 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.011G045300 [exp] 263 / 2e-84 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 254 / 6e-81 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G227700 [exp] 252 / 2e-80 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 252 / 2e-80 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10003659 pacid=23171426 polypeptide=Lus10003659 locus=Lus10003659.g ID=Lus10003659.BGIv1.0 annot-version=v1.0 ATGATGAAGCTTTTCATGACAACTTTCCTTGGACTTATCTTTGGCTTCTTCCTGGGAGTATCTTTACCAACATTGTTCCTTTCAAAGATGAATCTTCCAT CTGGTTTGTTTCCTTCCTTTGACATCACTTATATGGAGGACAAGTACTCCGCTATTTCACCACACGCACTGCTCAATGCTTTGTCCTCGCTAAGGGGCCA TAGCTCCAACTCCTTGCCATTTCACAGACACAATCGAACCGAGATATGGGTCAATGACAACCCTCGGGGTGCGCAGAGGTTGCCCCCTGGCATAGTAGTT GCTGAATCAGACTTGTATCCCCGACGATTGTGGGGTCCCCCCGACGAGGACTTGGCCATCAAACAGAAGTATCTTGTGACATTTACTGTTGGTTATGATC AGAAAAATAATATCAATGCAGCAATTCAAAAGTTTTCTGAGAACTTCACCATCCTATTGTTTCACTATGATGGCCGGACAACCGAATGGGATGAGTTTGA GTGGTCGAAGCGAGCAATCCACGTGAGTGCTCCGAAACAAACCAAGTGGTGGTTCGCCAAGCGTTTTCTGCATCCTGATATTGTTGCACCATATGACTAT ATTTTCATATGGGATGAAGATCTTGGCTTGGAGCATTTCAATGCCGAGGAATACATTAAACTGGTAAAGAAGAATAAGTTGGAAATTTCTCAGCCTGCTT TAGACCCTGAGAGAAGCACAACCTGGGCCATGACCAAGAGAAGAAATGACACAGAAGTTCACAAAAATGCCGAAGAGAAGCCTGGTTGGTGCAAAGAACC ATATTTACCACCCTGTTCATCATTTGTGGAGATTATGGCGCCAGTATTTTCTCGAGATGCATGGCGCTGTGCTTGGCATATGATTCAGAATGACTTGGTT CATGGATGGGGTCTTGACTTTTCTATGAGGAATTGTGTTGAGCCTGCTCACGAGAGGATAGGAGTTGTAGATGCTCAATGGATTGTTCATTTAGGGGTCC CTTCACTTGGGAACCAGGGAAAAGCAGAGAATGGGAAAGCACCATGGGAAGGGGTGAGGGAGAGGTGTGAAAAGGAATGGAAAATGTTTTATGATCGTGT TTCTCAAGCAAAGAAAGGCTATTTCTTGATGCTCAAATTTGCTACAGGGAATAATATAACCGGCAGCTAG
AA sequence Show only first row Show all	>Lus10003659 pacid=23171426 polypeptide=Lus10003659 locus=Lus10003659.g ID=Lus10003659.BGIv1.0 annot-version=v1.0 MMKLFMTTFLGLIFGFFLGVSLPTLFLSKMNLPSGLFPSFDITYMEDKYSAISPHALLNALSSLRGHSSNSLPFHRHNRTEIWVNDNPRGAQRLPPGIVV AESDLYPRRLWGPPDEDLAIKQKYLVTFTVGYDQKNNINAAIQKFSENFTILLFHYDGRTTEWDEFEWSKRAIHVSAPKQTKWWFAKRFLHPDIVAPYDY IFIWDEDLGLEHFNAEEYIKLVKKNKLEISQPALDPERSTTWAMTKRRNDTEVHKNAEEKPGWCKEPYLPPCSSFVEIMAPVFSRDAWRCAWHMIQNDLV HGWGLDFSMRNCVEPAHERIGVVDAQWIVHLGVPSLGNQGKAENGKAPWEGVRERCEKEWKMFYDRVSQAKKGYFLMLKFATGNNITGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	0	1
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	15.8	0.7267
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	19.4	0.7059
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	24.7	0.6617
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	34.1	0.6983
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	36.5	0.6859
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	40.0	0.6589
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026819 [exp]	41.0	0.6686
AT4G23885			unknown protein		Lus10003881 [exp]	42.7	0.6166
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10014705 [exp]	55.0	0.6001
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	64.2	0.6052

Compare expression of checked genes

Lus10003659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.