Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 90 / 8e-20 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G00970 82 / 3e-17 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G21400 81 / 1e-16 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G38830 80 / 2e-16 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23140 77 / 2e-15 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G05200 76 / 3e-15 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G00960 76 / 3e-15 Protein kinase superfamily protein (.1) AT4G23180 76 / 4e-15 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23280 76 / 4e-15 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G04510 74 / 1e-14 CRK38 cysteine-rich RLK (RECEPTOR-like protein kinase) 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 144 / 9e-39 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 144 / 2e-38 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10022286 [exp] 135 / 1e-37 AT3G22060 119 / 3e-32 Receptor-like protein kinase-related family protein (.1) Lus10018381 [exp] 134 / 2e-37 AT4G23180 283 / 3e-91 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007635 [exp] 134 / 9e-35 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10026629 [exp] 125 / 7e-32 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10022285 [exp] 113 / 2e-31 AT4G11530 60 / 9e-12 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) Lus10007633 [exp] 123 / 4e-31 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 122 / 8e-31 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 109 / 1e-26 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 96 / 1e-21 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028400 [exp] 94 / 2e-21 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G030000 [exp] 94 / 3e-21 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 94 / 5e-21 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 93 / 7e-21 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025100 [exp] 85 / 8e-20 AT4G23180 205 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.007G120900 [exp] 90 / 9e-20 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G029800 [exp] 88 / 4e-19 AT4G23220 568 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.004G024900 [exp] 88 / 4e-19 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10003660 pacid=23171433 polypeptide=Lus10003660 locus=Lus10003660.g ID=Lus10003660.BGIv1.0 annot-version=v1.0 ATGATCCGGTTTTCAAACCGGACCATCTACGGGATACTCGATCCGAACCCGGTCACTTTCTACATGAAGAACGTGGAAACTGCTTTCAGCCCCAACACGT TTAACTCTTCACTTTATACCCTGTTCACTCGGCTGAGGAAGACGGCCGTGGCTTCGGGAGTCAGGAAATTCGCTACCGGGAAGGAGAGGATCGGAACAGC TTTGACGATCTATGGACTCGTGCAGTGTTCTCCTGATTTGTCGAGCCAGCTCTGCGACGACTGCTTAGTTGACGCCATCCGTCAGATTCCGAGATGTTGT GGCGGGAGAATTGGAGGACGAGTTAGTAACCCTAATTGCAATTTTAGATTCGAGACTTCTCGATTTTATGCTGACTCGGAAGCACCGACAATATTACCGA CGTCTCCGCAGGTTTCTTCTCCGCCTCCTCCGCTCCCTGCAGGGGAAGAACAGAGTAAGAGTAATAGTACGAGCAGGAGGAATATAGTGATTGTGGTTCC GATACTCAGTGGTGCCATCGGGGTTATCTTTTCCTTCAGGTTTCGCCGCCTGGCATGGAAGAACTGGGAGGCGGGAACATATTCAAACGTTATAGATCCA TCTCTATTGATTTTTTTTGAAAACGAGATCACAAAATGCATCTATATCGGGTTGCTATGTGTACAAGAGAATCTAAGTGGAAGGCCAACCATGACTTCTG TTGCTCTCATGTTGACCAGTGACTCGCTGAGTCTGCAGCTGCCTTCGAGGTCGGGGTTCTTCGTGCACACCGACACCGATGATGATCAACTCAGCAACAA TGGAGGTTCATGGCGTTTCAGCCGCGCTTTAAGGAAGGCTAGTTCTTCTCCTACTACACAAGTGCTCTCTCTATCTCAAAATCATGTCTCTGTAACTGAA CTTTATCCTCGCTAA
AA sequence Show only first row Show all	>Lus10003660 pacid=23171433 polypeptide=Lus10003660 locus=Lus10003660.g ID=Lus10003660.BGIv1.0 annot-version=v1.0 MIRFSNRTIYGILDPNPVTFYMKNVETAFSPNTFNSSLYTLFTRLRKTAVASGVRKFATGKERIGTALTIYGLVQCSPDLSSQLCDDCLVDAIRQIPRCC GGRIGGRVSNPNCNFRFETSRFYADSEAPTILPTSPQVSSPPPPLPAGEEQSKSNSTSRRNIVIVVPILSGAIGVIFSFRFRRLAWKNWEAGTYSNVIDP SLLIFFENEITKCIYIGLLCVQENLSGRPTMTSVALMLTSDSLSLQLPSRSGFFVHTDTDDDQLSNNGGSWRFSRALRKASSSPTTQVLSLSQNHVSVTE LYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10003660 [exp]	0	1
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	8.9	0.7793
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10007863 [exp]	11.2	0.7705
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029186 [exp]	17.6	0.7458
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10030167 [exp]	23.2	0.7581
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	27.4	0.7698
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	31.0	0.7268
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	33.7	0.6660
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	34.7	0.7551
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	37.6	0.6531
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10000879 [exp]	40.4	0.7499

Compare expression of checked genes

Lus10003660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.