Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14460 564 / 0 Pseudouridine synthase family protein (.1) AT3G57150 81 / 3e-16 ATNAP57, ATCBF5, NAP57 homologue of NAP57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022284 [exp] 679 / 0 AT5G14460 551 / 0.0 Pseudouridine synthase family protein (.1) Lus10023565 [exp] 93 / 7e-20 AT3G57150 743 / 0.0 homologue of NAP57 (.1) Lus10040451 [exp] 89 / 6e-19 AT3G57150 582 / 0.0 homologue of NAP57 (.1) Lus10035418 [exp] 63 / 2e-10 AT3G57150 647 / 0.0 homologue of NAP57 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343100 [exp] 608 / 0 AT5G14460 585 / 0.0 Pseudouridine synthase family protein (.1) Potri.006G044100 [exp] 91 / 3e-19 AT3G57150 729 / 0.0 homologue of NAP57 (.1) Potri.016G041200 [exp] 88 / 2e-18 AT3G57150 741 / 0.0 homologue of NAP57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01509 [flax] [poplar] TruB_N TruB family pseudouridylate synthase (N terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10003661 pacid=23171439 polypeptide=Lus10003661 locus=Lus10003661.g ID=Lus10003661.BGIv1.0 annot-version=v1.0 ATGGCCCAGCCTCGCCGCCGCCGACCACCCACCCGGGTCTCCGACCCGGACTCACCCGACCCGGAAGCAGGACTCGACGATTGGGTTGATCAGAAGCTGT CGGAAGGAGGCATGGAGATGGACAAGTCGAAGAGGAAGTATTACAGCAAGAGGAAGAAACGGATGTACGGCACGGATTCCGAGGAGGAAGAGTTCAGGAA GAGCAGCGAGGAATCCTTGGTGGAATTGAAGCCCGAAGTTGTGGAATTCCACAGGCTGCATAAGAGAGAAGAGGAGCTGTACTTCTACGACGCGTTGGCT TATCCTTGGGAGAAAGATAAGCATTACAAGATGGTTTATCAGCTGGAGAAGAAGTATTTCCCTGACCAGTGCCTTGACAAGGCCTTTCTTGATCCTAAGG ACTCCAATCTGATGGCCAAAAGGAGTGTTAAGACTAGGGTTAAAAAAGATGATCATGTTGAAGGAGACAAAAAGCTCTTGTTTTTCGAAGAGGGGGATGT TAAGAAGGGTGAGGTAGTGGAGGATGATTTAGTCACACACAAGAAAGTAGCAGATTTCTTTAAGGTTTTGAAGAAGGGTCCTTCTGGAGCAAAGGTGGTT GAAGTTGGGTATGGTGGTGGAGAGCCATTCCTTGCTACTAGGACCACTGGACTTCCTCCAACCTGGGATGGTCCTTATGGCACTGTTGTCTTGGTCAACA AGCCTAAAGGGTGGACTTCATTTACCGTTTGTGGGAAGCTTCGTCGCCTGGTCAAAGTGAAAAAGGTTGGGCATGCTGGAACGCTTGATCCAATGGCGAC AGGTTTGTTGATTGTCTGTGTTGGGAAGTCTACTAAGATTGTAGATAGCTATCAGGGTATGGTCAAAGGTTACAGTGGAGTTTTTCGTCTAGGGGAAGCT ACTTCAACTTGGGATGCCGATTCCCCAGTCATCCAGCGTGAGCCTTGGGAGCACATTAAAGACAACGACATAAAGAAAGCTGCTGCATCTTTTGTTGGAG AGATATGGCAAGTTCCTCCAATGTTCTCAGCGATCAAAGTTGGAGGTGAGAAAATGTATGATAAAGCAAGAAGAGGAGAAAGCGTTGAGCTTGCACCAAG GAGAATTTCCATCCTCCAGTTTGACATTGAACGTAGCCTGGAGGACAGACAAAATCTGATATTTCGGGTGACATGCTCAAAAGGAACGTACATTCGGTCG TTATGTGCAGATCTTGGAAAAGCTCTTGGCAGTTGTGCTCATTTAACTGCACTTCGAAGAGATTCAATTGGAGAATATTCGGCAGATGATGCATGGGAGT TTAAAGAGCTGGAAGATGCTATTGCCAAATCATACTTCTAA
AA sequence Show only first row Show all	>Lus10003661 pacid=23171439 polypeptide=Lus10003661 locus=Lus10003661.g ID=Lus10003661.BGIv1.0 annot-version=v1.0 MAQPRRRRPPTRVSDPDSPDPEAGLDDWVDQKLSEGGMEMDKSKRKYYSKRKKRMYGTDSEEEEFRKSSEESLVELKPEVVEFHRLHKREEELYFYDALA YPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPKDSNLMAKRSVKTRVKKDDHVEGDKKLLFFEEGDVKKGEVVEDDLVTHKKVADFFKVLKKGPSGAKVV EVGYGGGEPFLATRTTGLPPTWDGPYGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKIVDSYQGMVKGYSGVFRLGEA TSTWDADSPVIQREPWEHIKDNDIKKAAASFVGEIWQVPPMFSAIKVGGEKMYDKARRGESVELAPRRISILQFDIERSLEDRQNLIFRVTCSKGTYIRS LCADLGKALGSCAHLTALRRDSIGEYSADDAWEFKELEDAIAKSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	0	1
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	5.9	0.8594
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	6.0	0.8695
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	6.1	0.8751
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	8.2	0.8596
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	8.2	0.8380
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10022454 [exp]	8.5	0.8724
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	17.9	0.8421
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	19.4	0.8557
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10011356 [exp]	22.2	0.8111
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	22.4	0.8320

Compare expression of checked genes

Lus10003661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.