Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01900 82 / 6e-19 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G20160 65 / 5e-13 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT5G67360 64 / 2e-12 ARA12 Subtilase family protein (.1) AT4G15040 64 / 2e-12 Subtilisin-like serine endopeptidase family protein (.1) AT2G04160 62 / 3e-12 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT3G14240 62 / 4e-12 Subtilase family protein (.1) AT5G59100 53 / 1e-08 Subtilisin-like serine endopeptidase family protein (.1) AT4G10550 52 / 2e-08 Subtilase family protein (.1.2.3) AT1G66210 51 / 3e-08 Subtilisin-like serine endopeptidase family protein (.1) AT4G10540 50 / 6e-08 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036546 [exp] 181 / 6e-54 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10041382 [exp] 171 / 3e-50 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10013187 [exp] 61 / 2e-11 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 60 / 3e-11 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10016064 [exp] 59 / 1e-10 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10006704 [exp] 58 / 1e-10 AT1G04110 594 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006702 [exp] 58 / 2e-10 AT1G04110 596 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10018702 [exp] 58 / 2e-10 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10018720 [exp] 57 / 3e-10 AT5G51750 184 / 4e-52 subtilase 1.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074600 [exp] 96 / 1e-23 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.014G171600 [exp] 62 / 4e-12 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G163600 [exp] 62 / 6e-12 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.011G151200 [exp] 61 / 1e-11 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.001G450401 [exp] 56 / 5e-10 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3) Potri.005G067200 [exp] 56 / 1e-09 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.003G071800 [exp] 55 / 1e-09 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 55 / 2e-09 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 54 / 3e-09 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.001G450600 [exp] 54 / 4e-09 AT1G32960 772 / 0.0 Subtilase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003663 pacid=23171420 polypeptide=Lus10003663 locus=Lus10003663.g ID=Lus10003663.BGIv1.0 annot-version=v1.0 ATGGAGGATTATCTTAATCATCTCTGTAGCCTGAACTATACCTCTACGTACATATCTGCGGTGATGTCCGGGAAGAGTTTCAACTGTTCTTCGAGTAGTT GGAGATCTGAATTACCCATTGATGTGGGTTTCAAAACGGGTGGATTGAGAAATGAGAGTTTGAAGTTCAAGAGAACGGTGACGAACATAGGGAAGAGTGG CAGGTACAAGGTGAAAGTGGAGGAACCAATTGGATATTCGGTGCAGGTGGAGTCGAAGGTTTTGGAGTTTGTGAAGCCGGGAAAGAAATTAAGTTATGGA GTGGAATTCATTGCAGGCGATGATGATGACTCTGGTTCAGGTACGTCGTCGTTTGGGAGAGTTGTTTGGTCGTCGGGGAAATACTCTGTTTGGAGTGCGA TTACAGTCACCTAG
AA sequence Show only first row Show all	>Lus10003663 pacid=23171420 polypeptide=Lus10003663 locus=Lus10003663.g ID=Lus10003663.BGIv1.0 annot-version=v1.0 MEDYLNHLCSLNYTSTYISAVMSGKSFNCSSSSWRSELPIDVGFKTGGLRNESLKFKRTVTNIGKSGRYKVKVEEPIGYSVQVESKVLEFVKPGKKLSYG VEFIAGDDDDSGSGTSSFGRVVWSSGKYSVWSAITVT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10003663 [exp]	0	1
AT1G53035			unknown protein		Lus10039835 [exp]	3.9	0.7775
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	4.6	0.8572
					Lus10029449 [exp]	4.7	0.8537
AT4G27890			HSP20-like chaperones superfam...		Lus10027048 [exp]	10.5	0.7965
AT5G58610			PHD finger transcription facto...		Lus10025387 [exp]	11.2	0.7895
					Lus10009357 [exp]	17.3	0.7692
					Lus10039781 [exp]	18.8	0.8054
					Lus10026969 [exp]	22.2	0.7524
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	23.2	0.8018
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	26.9	0.7936

Compare expression of checked genes

Lus10003663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.