Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01640 573 / 0 ATGLCAK ARABIDOPSIS THALIANA GLUCURONOKINASE, glucuronokinase G (.1) AT5G14470 551 / 0 GHMP kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022282 [exp] 706 / 0 AT3G01640 576 / 0.0 ARABIDOPSIS THALIANA GLUCURONOKINASE, glucuronokinase G (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343400 [exp] 575 / 0 AT3G01640 585 / 0.0 ARABIDOPSIS THALIANA GLUCURONOKINASE, glucuronokinase G (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003665 pacid=23171442 polypeptide=Lus10003665 locus=Lus10003665.g ID=Lus10003665.BGIv1.0 annot-version=v1.0 ATGGGGGAGACGATTGAGCACAGATCTTATGCCAGAGTCGGGCTTCTTGGTAACCCAAGCGACGTTTACTTCGGACGCACCATCTCTTTCAGCCTCTCCA ATTTCTGGGCCACCGTCCTTCTGAGCCCTTCCGATGATCTCGTCATCACTCCTCATCCTAAGCACGATCTTGTCAATTTCTCCTCCCTCGATCACCTGGT GAATCGGCTGCAGAGTGAAGGTTACTATGGAGGTGTGAGGCTGCTGATGGCAATCTGTAAAGTTTTCTACAATTACTGCAGGGAGAACAAGATTCAGCTT CATCAGCGCAAGTTTGCTCTTTCCTACGACACCAATATTCCTCGACAGGCAGGACTTTCTGGATCCAGTGCTATTGTATCTGCAGCCCTGAACTGCCTAC TTGACTTTTACAAAGTGAGGGATATGATCAAGCTTGAAATCAGGCCTAATCTAGTCCTTAGCGCAGAGAAAGAGCTTGGAATCGTTGCTGGCCTTCAAGA TCGTGTGGCACAGATATATGGTGGCCTTGTTTATATGGAATTCTCTCATGAACACATGGATAAGTTAGGACATGGGATCTACACACCCATGGACATTAAC CTTCTTCCACCACTTCGCCTCGTCTATGCTGAGAACCCTAGTGATTCCGGCAAGGTGCACAGTTCAGTCAGGCAAAGATGGCTCAACGGAGACAAGTTCA TCATAACAACAATGGAGGAAGTTGCAAACATAGCATTAGAAGGGAAAACTGCTATCCTTGAAAAGAACTACTCGAAACTTGCAGAGCTCATGAACCGTAA TTTTGATCTACGAAGGAGCATGTTTGGAGATGAAGTTATTGGTGCTTTAAACATAAAAATGGTGGAAACGGCACGAAAGGTGGGTGCTGCTTCAAAATTC ACCGGCAGTGGAGGTGCTGTGATTGTGTTTTGTCCGAATGGGCAGTCACAAGTAAAGCTCCTGGAGGACGAATGTCGAAAAGCTGGATTTGCAGTTGAAC CTGTGAAAATCGCCCAGACCAATCTTTCACGAGGATGA
AA sequence Show only first row Show all	>Lus10003665 pacid=23171442 polypeptide=Lus10003665 locus=Lus10003665.g ID=Lus10003665.BGIv1.0 annot-version=v1.0 MGETIEHRSYARVGLLGNPSDVYFGRTISFSLSNFWATVLLSPSDDLVITPHPKHDLVNFSSLDHLVNRLQSEGYYGGVRLLMAICKVFYNYCRENKIQL HQRKFALSYDTNIPRQAGLSGSSAIVSAALNCLLDFYKVRDMIKLEIRPNLVLSAEKELGIVAGLQDRVAQIYGGLVYMEFSHEHMDKLGHGIYTPMDIN LLPPLRLVYAENPSDSGKVHSSVRQRWLNGDKFIITTMEEVANIALEGKTAILEKNYSKLAELMNRNFDLRRSMFGDEVIGALNIKMVETARKVGAASKF TGSGGAVIVFCPNGQSQVKLLEDECRKAGFAVEPVKIAQTNLSRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	0	1
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	1.0	0.9871
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	1.4	0.9826
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	1.7	0.9805
					Lus10017917 [exp]	6.5	0.9751
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	6.9	0.9803
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	6.9	0.9662
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	7.1	0.9655
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	7.9	0.9749
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	8.0	0.9694
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	8.1	0.9779

Compare expression of checked genes

Lus10003665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.