Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27550 438 / 3e-148 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 123 / 2e-30 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 106 / 1e-24 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 102 / 1e-23 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G23070 84 / 1e-16 ATCFM3A CRM family member 3A (.1) AT3G01370 84 / 2e-16 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 80 / 3e-15 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 79 / 5e-15 ATCFM3B CRM family member 3B (.1) AT4G29750 76 / 4e-14 CRS1 / YhbY (CRM) domain-containing protein (.1) AT5G16180 59 / 6e-09 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022280 [exp] 890 / 0 AT3G27550 486 / 1e-167 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10009566 [exp] 140 / 7e-36 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10020391 [exp] 136 / 2e-34 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10041459 [exp] 109 / 2e-25 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10034313 [exp] 108 / 3e-25 AT2G28480 416 / 4e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10040896 [exp] 102 / 2e-23 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10022091 [exp] 88 / 1e-17 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10009031 [exp] 83 / 3e-16 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 83 / 4e-16 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343700 [exp] 523 / 3e-179 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 119 / 1e-28 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 114 / 2e-27 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 109 / 2e-25 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.010G077100 [exp] 85 / 7e-17 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 82 / 8e-16 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.006G148901 [exp] 77 / 4e-15 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.012G056100 [exp] 76 / 7e-14 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 69 / 8e-12 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.014G074400 [exp] 47 / 5e-05 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10003667 pacid=23171436 polypeptide=Lus10003667 locus=Lus10003667.g ID=Lus10003667.BGIv1.0 annot-version=v1.0 ATGTTGGCTTCAAGGATCCTTCGAACTAATTGCTTTAGAACATTATCTACTATCCACCTCCCCAATCCCTCCAGAAATTTGGTGGTTTTGAAAGATGTTG GTTCTACGGACAAGTACAGCCCAGCAGGCATTGTTGTGAGAGAAGAGTCACCTCTTATGCCGCCGTTAAATAGGCATCCTTTGGCGGGATGGCGCCGTGA AATGTCTACTTCGAAAGGGAGGAGCATGAGAAGCAAAGTGGAGAAAAGGATGAGGAAAGAGTCTGGCAAAACCATGAGGGAGATTAGGAGAGCTAAGAAG TTGAAGAAGAAACTCATGACTGATGAGGAGAGGCTTATTCACAATCTTAAAAAGGCTAAGAAGAAAGTGGCACTTCTCCTACAAAAGCTCAAGAAATATG AGCTGCCCGAGTTGCCACCGTCGCTGCATGATCCTGAGCTATTCACACCCGAGCAGCTTCAGGCATTTAAGAAGATAGGCTTCAAGAATAAAAATTATGT CCCTGTTGGTGTTCGAGGAGTGTTTGGAGGAGTTGTGCAGAATATGCACATGCACTGGAAATTCCACGAGACTGTGCAGGTGTGTTGTGACAACTTTCCA AAGGAAAAAATCAAGGAGATGGCCACCATGATAGCAAGACTTAGCGGGGGGATTGTGGTGAATATTCATAATGTGAAGACAATTATCATGTTTCGTGGCA GAAACTATCGTCAACCGAAGAACTTAATTCCCTTTAACACCCTAACGAAGAGGAAGGCATTATTTAAGGCCAGATTTGAGCAGGCCCTTGAATCACAGAA GCTAAACATCAAGAAGACAGAGCAACAGCTTCGGCGAATGGGTCTGAACCCTGAGGATCCAGTAGCCATGGCTAGCATCCAGAGAGTGGCTTCCACTTTC TTTAATGCTATTGATAGCAAAGAAGGAAGTCCTTACGTGTTTAAAGGTGAAGAAATCTCATTACAAGAGCCTGCTAATGACGCGGAGCATTCGGAATCCT CAACTGACAGTGACCAGGATGAGCTAGACAGATTTATATCTGAGATAGAGGATGCTGCAGATAAAGAATGGGCTGCAGAAGAAGCGGCAGAGCAAGAAGA ATTCGGTAGGATTAGGTATCTGAACAAAGCAGATTTCGGTGGGCGGATAAGAAGATCAGACACGTATCCTAATAATGAAACCTTCGACGATGATAATAGG CGAGGGAGGCGATGGCAAGATGGACACATTGATCGCAAGAGTGGCAGCCGTGATGATGAGAGTAGCATATCTGATGAAGACGGTCAGTGTGATTCTGATG ATTCCGAAGATGCTAATGATCATGGTAGATCTAGGCCATTGCTAGGGAAACAAGAACGGAGTAGTCCACATTATAGTAATGATCGTTTCACTAGAAGACC TGCAATTACACAAAGACCAAGGGATCCTGAAGAAGATTCTGAATCCGAAGACATGTTGAGCGATCTTGACAACACAATGTGGGATTCAGATGAGGAAGAT AAAAGTAGAGCACCAAAGAAGGAGCCAAGTGATAGTTTCAAAAGCAGCAGTGAAGAGGAAGACGAAGAGGATTCTTCTTTTCCAATTAAAAGAAACGACT ATTACAGGTCGAACGATCTCGAGAGTGATGCTGATGACGAGAAAGAAGTTCGCGAGAGGCCCTGGACAGCAGCTCGAAATGCAAGAACCAATCAAGGAAG ATTCAGCTCTACGGTTAGAGATACTCAAGCTGATTTCAGAGATTCCGCATCAGAAGAAGATGTGTTAAGCGATCCAGAAGCTCCAATGTGGTCATCAGAA TCTGAAGACGACTCGAGTAAAAACGGAGGCAGAAAATTTCATTTCGGTGACAATGATGATGAAAATGAGAGTGATGAGAAACAAGGGGGCAAGAGGGTAA AGTCAGCAAAAGAAGTAGATGAAACTTGGGACAGTGACTAG
AA sequence Show only first row Show all	>Lus10003667 pacid=23171436 polypeptide=Lus10003667 locus=Lus10003667.g ID=Lus10003667.BGIv1.0 annot-version=v1.0 MLASRILRTNCFRTLSTIHLPNPSRNLVVLKDVGSTDKYSPAGIVVREESPLMPPLNRHPLAGWRREMSTSKGRSMRSKVEKRMRKESGKTMREIRRAKK LKKKLMTDEERLIHNLKKAKKKVALLLQKLKKYELPELPPSLHDPELFTPEQLQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFP KEKIKEMATMIARLSGGIVVNIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGLNPEDPVAMASIQRVASTF FNAIDSKEGSPYVFKGEEISLQEPANDAEHSESSTDSDQDELDRFISEIEDAADKEWAAEEAAEQEEFGRIRYLNKADFGGRIRRSDTYPNNETFDDDNR RGRRWQDGHIDRKSGSRDDESSISDEDGQCDSDDSEDANDHGRSRPLLGKQERSSPHYSNDRFTRRPAITQRPRDPEEDSESEDMLSDLDNTMWDSDEED KSRAPKKEPSDSFKSSSEEEDEEDSSFPIKRNDYYRSNDLESDADDEKEVRERPWTAARNARTNQGRFSSTVRDTQADFRDSASEEDVLSDPEAPMWSSE SEDDSSKNGGRKFHFGDNDDENESDEKQGGKRVKSAKEVDETWDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	0	1
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	4.9	0.8756
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10016548 [exp]	5.0	0.8196
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	6.2	0.8818
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	6.2	0.8365
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	6.7	0.8716
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Lus10039230 [exp]	7.1	0.8296
AT4G08940			Ubiquitin carboxyl-terminal hy...		Lus10008711 [exp]	7.3	0.8186
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	7.9	0.8162
AT3G19440			Pseudouridine synthase family ...		Lus10027863 [exp]	8.2	0.8687
AT4G10620			P-loop containing nucleoside t...		Lus10016692 [exp]	8.5	0.8211

Compare expression of checked genes

Lus10003667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.