Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14490 266 / 8e-86 NAC ANAC085 NAC domain containing protein 85 (.1) AT3G01600 267 / 9e-86 NAC ANAC044 NAC domain containing protein 44 (.1) AT1G25580 248 / 3e-77 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G29230 228 / 5e-69 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT5G56620 213 / 7e-65 NAC ANAC099 NAC domain containing protein 99 (.1) AT4G28500 199 / 2e-60 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT1G28470 198 / 6e-60 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT3G12977 67 / 2e-12 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 66 / 1e-11 NAC ANAC058 NAC domain containing protein 58 (.1) AT1G02220 64 / 5e-11 NAC ANAC003 NAC domain containing protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021708 [exp] 268 / 7e-85 AT1G25580 462 / 4e-161 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10041492 [exp] 248 / 7e-78 AT1G25580 486 / 7e-171 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10034999 [exp] 223 / 7e-67 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10039873 [exp] 211 / 8e-65 AT4G28500 355 / 5e-123 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10012927 [exp] 214 / 2e-64 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10018637 [exp] 210 / 2e-64 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10013967 [exp] 197 / 3e-59 AT4G28500 320 / 2e-109 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10015392 [exp] 192 / 9e-58 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10003435 [exp] 67 / 5e-12 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343800 [exp] 355 / 7e-120 AT3G01600 266 / 5e-86 NAC domain containing protein 44 (.1) Potri.008G116600 [exp] 259 / 4e-82 AT1G25580 509 / 4e-180 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G129700 [exp] 258 / 8e-82 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.006G152700 [exp] 224 / 5e-68 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.018G068700 [exp] 224 / 5e-68 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.017G016700 [exp] 211 / 5e-65 AT4G28500 344 / 4e-119 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.011G058400 [exp] 210 / 1e-63 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.004G049300 [exp] 207 / 2e-63 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.007G135300 [exp] 194 / 3e-58 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.005G098200 [exp] 69 / 1e-12 AT1G56010 332 / 6e-114 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10003668 pacid=23171431 polypeptide=Lus10003668 locus=Lus10003668.g ID=Lus10003668.BGIv1.0 annot-version=v1.0 ATGACACTTCCCAAGCTGCCACCGTACCATCGCCAGCTCAGCAAGTGTTGGCAAGACATTCTTCGGCCAACTCCGGTCCCACCCAAATCACCTGGTTCGG TGGCTACTTCTACTGTGCACAGCCTCAAATCTGGAGCAACCTTTCTAAAACATCTTGACTTGCTCTCTTTAAATTGCAGGGCTTGGGTTCTGGATGGGAA ATCAATTGCTAGGAAACTTACTCGAACTTGTTCTTCTGAATCCATCAATGACTTGGGAGCTTCCAGGGAATGTCCCAACTGCCATCATGAAATAGACAAT AGTGATGTGATGAATGAGTGGCCTGGCCTACCAGCAGGGGTGAAGTTTGCCCCAACTGATGCAGAGCTCGTTCAGCATTTAGCAGCCAAATGTGGCATTG GTAACTCAACTCCTCATCTGTTTATCGACGACTTCATTCCAACTCTTGAAGGGGATACTGGAATTTGTTATTCTCATCCTGAAAACCTTCCTGGTGCCAG GAAAGACGGGACTGGTGTCCATTTCTTTCACCGCACGATGAATGCTTATGCTACTGGTCACAGGAAGCGCCGAAAGATCCTAACCGAACATAGTACTGCT GCTGCTGCCACCAAAGAACATGTGCGTTGGCATAAGACAGGCAAGACAAAGTCTGTGCTACTAAATGGGGTTCATAAGGGCTGCAAAAAGATCATGGTGT TGTACAAGAGTTCAAAGAAAGGGTGTAAACCTGAGAAAACAGATTGGATAATGCACCAGTTCCATTTGGGGACTAATGAGCATGAGATGGCTGGTGAATA TGTGGTGTCAAGGATCTTTTATCAGCTTCCCAAGCACAGCACTGAAACTGTCGTCCCACCTGTGATGGTGCACAATGCTGCTACTACTCCAATGACCCCT AACCTTAACCCTCCGACTCGTCCTCGACCCGAGAAGTCGATTCTGTATGATGATGTTGCTGATGACACCGTTACAGATTATTCTCCTATCCAGGAGCAAA AAATCAATGCTTTGGCTTTTGACGATGTGGGGGGATATGAAGCAGCATGGTTGGCTGGTGAATCCCAGCCTGTTGAAAACTCTCATCACTTCTCTAACAA CATTGATAATTCCTTAGTATGCAAACAGATTTTCAGTTCCTCATCTCTTTTCGCTAAAAACTCGGGACTTAATCTAGTCTCACCATACACTACTATGAAC TGCAACACTAGCGGAGATAGTGGCAATAACAACCCTCCCGGTGGAGTTCCATACCTGGAGAACATAGAAGTGGACACTCCACCAGATTTCCAGCTTTCTG ATCTGCAATTTAGCTCCCAGGATAGCCTTTTAAGTTGGCTGGACAAAATATGA
AA sequence Show only first row Show all	>Lus10003668 pacid=23171431 polypeptide=Lus10003668 locus=Lus10003668.g ID=Lus10003668.BGIv1.0 annot-version=v1.0 MTLPKLPPYHRQLSKCWQDILRPTPVPPKSPGSVATSTVHSLKSGATFLKHLDLLSLNCRAWVLDGKSIARKLTRTCSSESINDLGASRECPNCHHEIDN SDVMNEWPGLPAGVKFAPTDAELVQHLAAKCGIGNSTPHLFIDDFIPTLEGDTGICYSHPENLPGARKDGTGVHFFHRTMNAYATGHRKRRKILTEHSTA AAATKEHVRWHKTGKTKSVLLNGVHKGCKKIMVLYKSSKKGCKPEKTDWIMHQFHLGTNEHEMAGEYVVSRIFYQLPKHSTETVVPPVMVHNAATTPMTP NLNPPTRPRPEKSILYDDVADDTVTDYSPIQEQKINALAFDDVGGYEAAWLAGESQPVENSHHFSNNIDNSLVCKQIFSSSSLFAKNSGLNLVSPYTTMN CNTSGDSGNNNPPGGVPYLENIEVDTPPDFQLSDLQFSSQDSLLSWLDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	0	1
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	1.7	0.9506
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	3.2	0.9270
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	4.0	0.9219
					Lus10036703 [exp]	4.6	0.9258
					Lus10000348 [exp]	5.5	0.8879
AT3G57910			D111/G-patch domain-containing...		Lus10021033 [exp]	6.7	0.8710
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026876 [exp]	6.9	0.8410
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	7.1	0.8971
					Lus10027118 [exp]	8.4	0.7298
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	9.9	0.8508

Compare expression of checked genes

Lus10003668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.