Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23180 428 / 1e-145 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39490 416 / 1e-140 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT4G39480 401 / 4e-135 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G21910 401 / 4e-135 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G32170 393 / 5e-132 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT1G65340 392 / 8e-132 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT1G47620 387 / 1e-129 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT5G23190 387 / 5e-129 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G57750 385 / 5e-129 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT5G52320 384 / 2e-128 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002527 [exp] 902 / 0 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 867 / 0 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10035234 [exp] 510 / 2e-177 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10035235 [exp] 492 / 2e-170 AT4G39490 359 / 2e-118 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002525 [exp] 435 / 5e-148 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022277 [exp] 432 / 3e-147 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10025677 [exp] 407 / 2e-137 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10028047 [exp] 404 / 2e-136 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025678 [exp] 403 / 6e-136 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064400 [exp] 474 / 8e-164 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 469 / 1e-161 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 446 / 7e-153 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G080300 [exp] 436 / 9e-149 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 425 / 2e-144 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G072100 [exp] 385 / 4e-128 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 385 / 4e-128 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.015G087000 [exp] 375 / 4e-126 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.008G183300 [exp] 377 / 1e-125 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 367 / 2e-121 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10003669 pacid=23171427 polypeptide=Lus10003669 locus=Lus10003669.g ID=Lus10003669.BGIv1.0 annot-version=v1.0 ATGGCGCCGGCGGGGGCTACTAAATTAAGTTGTNNAAACATAGTGGTATCTTCGCTGCTGCCTCTAATGGTGGTTTACGTGGTGGTTCGGAAGAGCAAAT CTTCGATATTACCAAACTGGCCTCTGGTCGGTATGGTTCCATCTCTACTGTGGCATGTCTCCCGCAACCTCCTACACCAACTCCACACCCAAGTACTGAA ACAAGAAGGAGGCTCTTTCTTCTTCAAAGGTCCCATTTTTACTGGTCTCAACTTCTTTACCACCTCTGATCCTGCTAACGTCCACCACATCTTGAGCCGC AACTTCCCCAACTATCCCAAGGGGGCAGATCTGAAGGAAATACTGGAGCCATTAGGCGACGGAATATTCAACGCCGACGGCCATTCATGGAAGACGCAAC GGGAAATGATCCATTCCTTAATCAGCACCTCCAAATTCGAGCGACTGATGCTCAAAACCCTCCGCCGCAAGTTGGAGAATGCCCTTATCCCCATCCTCCA CGACGCCTCTTCTTCATCATCAAAAACCCTCGACTTACAAGAACTGATGAAGCGTTTCACTTTCGACACCATCTGTCAGCTAGTCTTAGGATTCGACCCC GAGTACCTATCCTTGGAACTTCCATACTTGGATTACGCCGAGGCGTTTGATGTGATTGAGGAAGTAATCGTGTACCGCCATTGCGTTCCTCTGTGCGTGT GGAAATTGCAGAAATGGCTTGGAATTGGGGAGGAGGCCAAGATGAAAAAGGCTTCCAAATGCTTTGGGAGGTTCTTGGATGAGAGGGTTAAGACGAAGAA AGAAGAACAGGGAAGATCTTCCGACGATGATTTTCTAACGCAGCTTATATCAGAGACGGAACGGATTGGGGAATCCGATGGTTTCTTGAAAGACGCTACG TTTAACTTGATTGTAGCAGGGAGGGATACTATTGCTGCTGCTCTCAGTTGGTTCTTCTGGCTTGTGGCTATCAATCCGGTTGTTGAGCAAAATATTCTGC AAGAAATGGATCATGTCATTTCTAGTACTGGTGCATTAGATGATAAGAGCAGCAGCATTAACATGATTCCAAGCATGGAGGAACTGAGCAGATTAGTGTA TCTGCAGGGAGCCATAAGTGAGACTCTGCGGCTGTACCCATCAGTGCCTTTCGAGCATAAGCAAGCCCTGGAAGCAGATGTGCTCCCCAGTGGTCATGCC ATTAGCAGCAATACGAAAGTTATACTGTCTCTTTACTCAATGGGGAGAATGGAAGGGATATGGGGTGAGGATTGCTTGGAATTCAAACCTGAAAGATGGG TTTCACATAAAAAAGGTCACGATGGGAAGATAGTTTATGTACCATCGTACAAGTTTCCAGCCTTCTTAGCAGGACCCAGGACTTGCTTGGGGAGGAAGAT AGCATTCATACAGATGAAGGTTATAGCATGTTGTGTACTGCGCAAGTTTAAGATTGAGGTGGTGGAAGGGCATCCGGTGGTTCCAGTTCCTGCCATCCTT CTGTTCATGACATATGGACTCAAAATCAGAGTTTCTCAGAGGGCGACTAGTACTGTAGCTTTATGA
AA sequence Show only first row Show all	>Lus10003669 pacid=23171427 polypeptide=Lus10003669 locus=Lus10003669.g ID=Lus10003669.BGIv1.0 annot-version=v1.0 MAPAGATKLSCXNIVVSSLLPLMVVYVVVRKSKSSILPNWPLVGMVPSLLWHVSRNLLHQLHTQVLKQEGGSFFFKGPIFTGLNFFTTSDPANVHHILSR NFPNYPKGADLKEILEPLGDGIFNADGHSWKTQREMIHSLISTSKFERLMLKTLRRKLENALIPILHDASSSSSKTLDLQELMKRFTFDTICQLVLGFDP EYLSLELPYLDYAEAFDVIEEVIVYRHCVPLCVWKLQKWLGIGEEAKMKKASKCFGRFLDERVKTKKEEQGRSSDDDFLTQLISETERIGESDGFLKDAT FNLIVAGRDTIAAALSWFFWLVAINPVVEQNILQEMDHVISSTGALDDKSSSINMIPSMEELSRLVYLQGAISETLRLYPSVPFEHKQALEADVLPSGHA ISSNTKVILSLYSMGRMEGIWGEDCLEFKPERWVSHKKGHDGKIVYVPSYKFPAFLAGPRTCLGRKIAFIQMKVIACCVLRKFKIEVVEGHPVVPVPAIL LFMTYGLKIRVSQRATSTVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10003669 [exp]	0	1
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	9.4	0.8859
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	10.2	0.8563
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	10.5	0.8824
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	10.8	0.8754
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	14.6	0.8746
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	15.7	0.8623
AT1G73350			unknown protein		Lus10031897 [exp]	16.1	0.8708
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	17.5	0.8511
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10006727 [exp]	19.7	0.8705
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	24.5	0.8661

Compare expression of checked genes

Lus10003669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.