Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21610 198 / 2e-65 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT1G67600 176 / 1e-56 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 172 / 3e-55 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G61770 102 / 1e-26 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 67 / 5e-14 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000883 [exp] 295 / 7e-104 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10035299 [exp] 189 / 1e-61 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 183 / 2e-58 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10011373 [exp] 162 / 2e-51 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 161 / 6e-51 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 125 / 2e-37 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10030253 [exp] 98 / 3e-26 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001841 [exp] 66 / 5e-13 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 66 / 6e-13 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087100 [exp] 241 / 2e-82 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 175 / 3e-56 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G056600 [exp] 175 / 4e-56 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.014G156000 [exp] 170 / 2e-54 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G171300 [exp] 105 / 1e-27 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 56 / 1e-09 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10003670 pacid=23149319 polypeptide=Lus10003670 locus=Lus10003670.g ID=Lus10003670.BGIv1.0 annot-version=v1.0 ATGAACGAAGTCATCACAGCTGCTGATGTATCAGCGAGGTTCCGATCAGCCGCATATCAGCCCTCCATCATCTCTTCTAATGTCCCACTCGTCACGGCCT TCCTCGCATTAGCTATCGCCCAGTTCCTCAAACCTTTCACCGTCTGGTTCAAGGAGAGAAGATGGGATTCTCGAAGGATGCTTGGATCTGGTGGAATGCC CTCCTCACATTCCGCAACGGTGACAGCACTTGCTGTGGCTGTTGCACTGCAGGAAGGAACCGGGGCACCAACTTTTGCTGTTGCACTGGTTTTGGCTTGC GTTGTTATGTATGACGCTACTGGTGTTAGACTTCATGCTGGCCGTCAGGCTGAGTTATTGAATCAAATAGTGTGTGAGCTGCCTCCTGAACATCCTGTCT CCAATTGTAGACCACTTCGGGATAGCCTTGGTCATACTCCCATCCAGGTTTGTTGCTCTCTCGCTGTTCCCGATTTGAAGGAATGGCCAACGTTCTGTTT CAGAGTGCCCCGGAACTTGTCTAATGAAGGTGGTGTTAAGAACAATTAA
AA sequence Show only first row Show all	>Lus10003670 pacid=23149319 polypeptide=Lus10003670 locus=Lus10003670.g ID=Lus10003670.BGIv1.0 annot-version=v1.0 MNEVITAADVSARFRSAAYQPSIISSNVPLVTAFLALAIAQFLKPFTVWFKERRWDSRRMLGSGGMPSSHSATVTALAVAVALQEGTGAPTFAVALVLAC VVMYDATGVRLHAGRQAELLNQIVCELPPEHPVSNCRPLRDSLGHTPIQVCCSLAVPDLKEWPTFCFRVPRNLSNEGGVKNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10003670 [exp]	0	1
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	2.6	0.8076
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	6.2	0.7481
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	22.4	0.6907
AT2G36780			UDP-Glycosyltransferase superf...		Lus10007597 [exp]	23.1	0.7145
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10039977 [exp]	25.2	0.6858
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	25.3	0.7045
AT1G55170			unknown protein		Lus10015628 [exp]	40.4	0.5911
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	45.2	0.6795
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	51.0	0.6680
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	52.9	0.6322

Compare expression of checked genes

Lus10003670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.