Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20440 477 / 6e-163 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT5G03650 207 / 2e-60 SBE2.2 starch branching enzyme 2.2 (.1) AT2G36390 197 / 1e-56 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000912 [exp] 643 / 0 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10016012 [exp] 224 / 2e-66 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 221 / 2e-65 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10023878 [exp] 191 / 4e-54 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014382 [exp] 189 / 2e-53 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10027725 [exp] 100 / 8e-23 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359200 [exp] 499 / 4e-171 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.005G251000 [exp] 225 / 9e-67 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G115100 [exp] 198 / 7e-57 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF02806 [flax] [poplar] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain
Representative CDS sequence Show only first row Show all	>Lus10003674 pacid=23149321 polypeptide=Lus10003674 locus=Lus10003674.g ID=Lus10003674.BGIv1.0 annot-version=v1.0 ATGATCTACACACATAATGGCTTTGCTTCGTTTACAGGCGATTTGGAAGAGTACTGTAATCAATACGTTGACAAAGAGGCCTTACAGTATCTGATGTTCG CAAACGAGCTCTTGCATGTTATTCATCCTAACATAATCACAATTGCGGAAGATGCAACATCCTATCCAGGACTCTGTGATCCAATTTCTCAAGGTGGATT GGGATTCGATTACTATGTAAATCTTTCTGTGCCTGAGTTGTGGTTATCATTTCTTCAGAATGTTCCAGACCAAGAATGGAGTATGAGCAAGATTGTCAGC ACATTAATGGGCAACAAACACTATGCGGATAAGATGCTAGTGTATGCTGAAAATCATAACCAATCCATCTCTGGAGGGCAGTCATTTGCTGAAATTTTGA TTGGCGAAACAGTAGATCGGTCTTCCGTCTCTGAGGAAATGGAGCTTAGAGGTTGTGCACTACTCAAAATGATCAAATTGATTACTTTTACATTAAGTGG TGGGCATGCTTACCTCAATTTCATGGGCAATGAATTTGGGCATCCCAAGAGGGTTGAGTTCCCAGTGTTGAGCAACAACTTCTCATATTCACTTGCGAAC CGGCAATGGGATCTGCTCGAAAATGTTGGCCTGCATCAACATTTGTTTTCCTTTGATAAGGATCTAATGCGTCTGGGTGAAAATCAAAAGGCGATTTCAA GAGGTTTGCCAAATGTCCACCATGTGAACGACACGGCCATGGTGATAGCTTACATAAGAGGTCCTCTGCTCTTCGTCTTCAACTTCCATCCTACCGATTC CCACCTGACATACAACGTTGGCGTAGAAGAAGCTGGGGAGTATCATGTAAAGAGTTTCGCTTTACTTACTATCATTCTGAATACCGACGATGACAAGTAT GGGGGTGAGGGGACTATAGAGGCGGGAAAATATAGTCAAAAAACGATTACTGGGAGAGTGGATGGTCTTAGATATTGCTTACAGTTGCAGTTGCCTAGCA GAAGTGGCCAGGTTAGTAGATTAGTTGGTGTGGTTTAG
AA sequence Show only first row Show all	>Lus10003674 pacid=23149321 polypeptide=Lus10003674 locus=Lus10003674.g ID=Lus10003674.BGIv1.0 annot-version=v1.0 MIYTHNGFASFTGDLEEYCNQYVDKEALQYLMFANELLHVIHPNIITIAEDATSYPGLCDPISQGGLGFDYYVNLSVPELWLSFLQNVPDQEWSMSKIVS TLMGNKHYADKMLVYAENHNQSISGGQSFAEILIGETVDRSSVSEEMELRGCALLKMIKLITFTLSGGHAYLNFMGNEFGHPKRVEFPVLSNNFSYSLAN RQWDLLENVGLHQHLFSFDKDLMRLGENQKAISRGLPNVHHVNDTAMVIAYIRGPLLFVFNFHPTDSHLTYNVGVEEAGEYHVKSFALLTIILNTDDDKY GGEGTIEAGKYSQKTITGRVDGLRYCLQLQLPSRSGQVSRLVGVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	0	1
AT5G66550			Maf-like protein (.1)		Lus10040470 [exp]	1.7	0.9246
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	2.8	0.9242
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	4.0	0.9192
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	4.5	0.9163
AT1G26090			P-loop containing nucleoside t...		Lus10034265 [exp]	5.7	0.9059
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	6.0	0.9073
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	7.7	0.9154
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10029142 [exp]	8.4	0.8985
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	9.2	0.9132
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	9.3	0.9225

Compare expression of checked genes

Lus10003674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.