Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20440 756 / 0 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT2G36390 184 / 6e-50 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT5G03650 175 / 7e-47 SBE2.2 starch branching enzyme 2.2 (.1) AT4G09020 48 / 1e-05 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 44 / 0.0004 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000912 [exp] 951 / 0 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10014382 [exp] 179 / 4e-48 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10023878 [exp] 175 / 1e-46 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 152 / 3e-39 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10016012 [exp] 150 / 2e-38 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10027725 [exp] 105 / 2e-23 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10021586 [exp] 48 / 2e-05 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 48 / 2e-05 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359200 [exp] 775 / 0 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G115100 [exp] 174 / 2e-46 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.005G251000 [exp] 159 / 2e-41 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G070800 [exp] 51 / 2e-06 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 50 / 5e-06 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.018G132500 [exp] 46 / 5e-05 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10003675 pacid=23149322 polypeptide=Lus10003675 locus=Lus10003675.g ID=Lus10003675.BGIv1.0 annot-version=v1.0 ATGGCGTCTGTTGTCTCCTCCACCAAAATTTCTCTCTGCCTTTATCCAACTGAATCGTCTCCTCATTTTCCTCCTGATTCAAGTTTTCAAAACATCAGAT TCCCCACCAAAATTAGACTAGCAGTGAAATGTTCAGCCGCCAACCAGCCGAAACAGCAGAATAAAAGCAAGAAAAGGGATAAAAATGAAGAAGATGACGA TAAAGTAGTAAACCCAGTTGGTTTCCTCACCAGACTTGGCATTACCCATAAACAATTTGCAATCTTTCTCCGTGAAAGGCATAAAGCATACAAGGACCTC AAAGAAGACATTTCCAAGAGACAATTTATGGTTAAGGACCTTGCTTATGGATTCGAGTTAATGGGTCTGCATAGACATCCAGAGCATCGCATGGATTTCA TGGACTGGGCACCAGGTGCTCGCTATGGTTCACTCGTTGGTGACTTTAATGATTGGTCACCAACTGAGAATTCTGCTAGAGAGGGTCTACTTGGTCATGA TGATTATGGTTACTGGTTTATTGTACTTGAAGATAAATTGAGGGAGGGAGAAGAGCCTGATGAACTTTATTTTCAGCAGTACAATTATTTGGAGGACTAT GATAAAGGGGATAGTGGCGTTAGCATTGATGAACTCTTCCAGAAAGCAAGTGATGACTACTGGGAACCTGGAGAGGATGAGTACATTAAAAATCGTTTGA AAGTACCAGCAAAGTTGTATGAGCAATTTTTTGGCCCTAATGGACCTCAGACATTAGAAGAACTTGAAGAGATACCACTGAAGGATGCAGAGACAAGATA TAAGGAGTGGAAAGAACAACATAAAGATGACCCACCAAGTAACTTACCTCCTTTCGATGTGATTGATCAAGGAAAGGAGTATGACATTCTTAATGTTGTA AGTGACCCTGCTTGGCTAGCGAAAGTTCGCTCCAAGGATCCTCCCTTACCATATTGGCTTGAGATACGTAAAGGAAGGAAAGCATGGTTGAAAAAGTATA GCCCAGCTGTTCTTCATGGAAGCAAATACAGGGTCTATTACAACACTCCTGATGGCCAGTTGGAAAGGGTACCTGCTTGGGCTACCTATGTGCAACCAGA TGTGAATGGGAAGCAAGCTTATGCCATTCACTGGGAACCGCCTCCAGAACGTGCTTATAAATGGAAGCAAACAGCCCCAATAGTTCCGAAATCCTTGCGG ATATATGAGTGTCATGTTGGGATTAGTGGATCTGAACAGAAAATAGCATCATTCAATCACTTCACTGAGAAGGTTCTTCCTCATGTCAAGGAAGCTGGAT ATAATGCTATTCAGTTGATAGGAGTTGTTGAGCACAAAGATTATTACACAGTTGGTTACAGAGTCACCAACTTCTTTGCTGTTAGCAGTCGTTATGGTAC CCCTGATGACTTCAAACACTTGGTTGATGAGGCACATGGATTCGGATTGCTAGTGTTCTTAGAGATTGTTCATTCGTATGCCGCTGCAGATGAAATGGTT GGGCTGTCATTGTTTGATGGATCGAACGATTGCTACTTTCACACTGGTAAACTGTTTCAAGGAATAGGATGTTAA
AA sequence Show only first row Show all	>Lus10003675 pacid=23149322 polypeptide=Lus10003675 locus=Lus10003675.g ID=Lus10003675.BGIv1.0 annot-version=v1.0 MASVVSSTKISLCLYPTESSPHFPPDSSFQNIRFPTKIRLAVKCSAANQPKQQNKSKKRDKNEEDDDKVVNPVGFLTRLGITHKQFAIFLRERHKAYKDL KEDISKRQFMVKDLAYGFELMGLHRHPEHRMDFMDWAPGARYGSLVGDFNDWSPTENSAREGLLGHDDYGYWFIVLEDKLREGEEPDELYFQQYNYLEDY DKGDSGVSIDELFQKASDDYWEPGEDEYIKNRLKVPAKLYEQFFGPNGPQTLEELEEIPLKDAETRYKEWKEQHKDDPPSNLPPFDVIDQGKEYDILNVV SDPAWLAKVRSKDPPLPYWLEIRKGRKAWLKKYSPAVLHGSKYRVYYNTPDGQLERVPAWATYVQPDVNGKQAYAIHWEPPPERAYKWKQTAPIVPKSLR IYECHVGISGSEQKIASFNHFTEKVLPHVKEAGYNAIQLIGVVEHKDYYTVGYRVTNFFAVSSRYGTPDDFKHLVDEAHGFGLLVFLEIVHSYAAADEMV GLSLFDGSNDCYFHTGKLFQGIGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10008829 [exp]	1.0	0.9374
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	3.7	0.9360
AT3G22690			unknown protein		Lus10039355 [exp]	4.6	0.9107
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10030787 [exp]	5.7	0.9241
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	6.5	0.8969
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	6.7	0.9289
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	6.9	0.9028
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	7.5	0.9005
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028199 [exp]	7.6	0.8763
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	9.7	0.8980

Compare expression of checked genes

Lus10003675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.