Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45770 239 / 7e-78 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041358 [exp] 302 / 2e-102 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10036570 [exp] 296 / 4e-99 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078800 [exp] 246 / 1e-80 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.002G155400 [exp] 40 / 0.0006 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00448 [flax] [poplar] SRP54 SRP54-type protein, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10003676 pacid=23149317 polypeptide=Lus10003676 locus=Lus10003676.g ID=Lus10003676.BGIv1.0 annot-version=v1.0 ATGGCTACACCTCAAGCTCAAGCTCAAGCTCAAGCTCATCCGTCGCTCCTTCTTTCCAATTCTTCGCCGCAGCCGCAACTCTTCTACACTCTACGACAAC AGACCGTGCTCGTTCACGGCAGAGCAAGAACAACCAGGTTCAAATGCTCGGCGACAACAGGGACGGGGTTCTTCAGCCGGCTGGGGCGATTGATAAAAGA GAAGGCGAAAAGCGACGTGGAGAAGATCGTCTCCGGATTCTCCAAAACTCGAGACAATCTCGCTGTCATCGACGAACTCCTCCTCTACTGGAACCTCTCC GAGATTGACCGAGTCCTCGACGAGCGCGAGGAGATCACTATCAAGATTGTGGAGAGCTTGTGGAAGGATATACTGGCGGGGAAGTTCAAATCAGGGACTG AAATCAAGAGTCGTGTGCTGGATTTGTTGGTCAAGAAGGGGAGCAAGACGGAGCTCCAACTTGGATTCAGGAAACCGGCTGTGATTATGATAGATGGTAT TAATGGAGGTGGGAAAACCACATCTCTTGGTAAGAGAAGAGTTCCTGAGTTGAATTGCTTTTTGTTACTTTTTGTTTTCGAATTGCTTATGTTGGAGATA TGGGCTGAAAGGACCGGATGTGAAATTGCAGTGGCTGAAGAAGAGAAGGCAAAAGCCGCATCAGTTCTTTCACGAGCTATAAAACGAGGAAAGGAGCAAG GCTTTAATATTGTTCTGTGCGACACTTCTGGACGTAAGTAG
AA sequence Show only first row Show all	>Lus10003676 pacid=23149317 polypeptide=Lus10003676 locus=Lus10003676.g ID=Lus10003676.BGIv1.0 annot-version=v1.0 MATPQAQAQAQAHPSLLLSNSSPQPQLFYTLRQQTVLVHGRARTTRFKCSATTGTGFFSRLGRLIKEKAKSDVEKIVSGFSKTRDNLAVIDELLLYWNLS EIDRVLDEREEITIKIVESLWKDILAGKFKSGTEIKSRVLDLLVKKGSKTELQLGFRKPAVIMIDGINGGGKTTSLGKRRVPELNCFLLLFVFELLMLEI WAERTGCEIAVAEEEKAKAASVLSRAIKRGKEQGFNIVLCDTSGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	0	1
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	2.0	0.8066
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	2.2	0.8157
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	2.8	0.7652
AT3G62010			unknown protein		Lus10038011 [exp]	3.2	0.7801
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	5.5	0.7591
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	7.9	0.7878
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	9.4	0.7853
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	15.3	0.7636
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	15.7	0.7739
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	16.2	0.7568

Compare expression of checked genes

Lus10003676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.