Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21220 89 / 3e-22 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 89 / 3e-22 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G18350 73 / 2e-16 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G73500 70 / 4e-15 ATMKK9 MAP kinase kinase 9 (.1) AT1G32320 62 / 1e-12 ATMKK10 MAP kinase kinase 10 (.1) AT5G56580 62 / 2e-12 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G29810 61 / 6e-12 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT5G40440 57 / 1e-10 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT3G06230 54 / 2e-09 ATMKK8 MAP kinase kinase 8 (.1) AT4G26070 54 / 2e-09 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035764 [exp] 93 / 2e-23 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10040128 [exp] 76 / 1e-18 AT1G73500 186 / 1e-59 MAP kinase kinase 9 (.1) Lus10001081 [exp] 74 / 3e-17 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10023664 [exp] 58 / 8e-12 AT1G51660 52 / 5e-09 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10027623 [exp] 59 / 6e-11 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10012938 [exp] 58 / 7e-11 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10022265 [exp] 58 / 9e-11 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10011945 [exp] 57 / 1e-10 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10037340 [exp] 53 / 2e-10 AT3G21220 95 / 4e-25 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009800 [exp] 94 / 5e-24 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 93 / 1e-23 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 80 / 9e-19 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.008G183700 [exp] 71 / 1e-15 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.010G049500 [exp] 69 / 5e-15 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.014G047101 [exp] 62 / 2e-13 AT3G21220 83 / 9e-20 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 64 / 6e-13 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.018G050800 [exp] 59 / 3e-11 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 57 / 2e-10 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.001G345500 [exp] 56 / 3e-10 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003677 pacid=23179481 polypeptide=Lus10003677 locus=Lus10003677.g ID=Lus10003677.BGIv1.0 annot-version=v1.0 ATGGATACGCTGTCGTATGTGAGTCCTGAAAGGATTGACGTGGAGCTGAACGACGACGTTTCTTCTGGACCGGAGTACTTCGGCGGGGATATTTGGGGGT TCGGGATGACTATTCTTGAAGCCTATATGGGAAGGTATCCGATTGATGGAGAGCCGCCGGTAAAGGAAGGTGTTTGCATGCGGCTGATGAAGGCAATTGT TGAGGCGGCGCCGCCAAGAGCCCCGCCGTCTGCGCCGGCGGATTTTTCCGATTTTATCTCTTGCTGCTTGAGAAAAGAGGCAGCAAGTAGGTGGACCGCA GCGGAGCTGCTCCAGCACCCGTTTATATTGCAGCGCGGCGCCGGCGCCGACGAGTAG
AA sequence Show only first row Show all	>Lus10003677 pacid=23179481 polypeptide=Lus10003677 locus=Lus10003677.g ID=Lus10003677.BGIv1.0 annot-version=v1.0 MDTLSYVSPERIDVELNDDVSSGPEYFGGDIWGFGMTILEAYMGRYPIDGEPPVKEGVCMRLMKAIVEAAPPRAPPSAPADFSDFISCCLRKEAASRWTA AELLQHPFILQRGAGADE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10003677 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	21.0	0.7873
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	38.5	0.7705
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	40.8	0.6765
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	42.4	0.7233
AT3G59850			Pectin lyase-like superfamily ...		Lus10002125 [exp]	44.6	0.7441
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015243 [exp]	101.8	0.6575
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041465 [exp]	105.5	0.7181
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10006707 [exp]	108.9	0.6896
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	167.6	0.6853
					Lus10036060 [exp]	210.4	0.6642

Compare expression of checked genes

Lus10003677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.