Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52530 528 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201700 [exp] 504 / 0 AT1G52530 456 / 1e-162 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [flax] [poplar] DNA_clamp PF04005 [flax] [poplar] Hus1 Hus1-like protein
Representative CDS sequence Show only first row Show all	>Lus10003678 pacid=23179487 polypeptide=Lus10003678 locus=Lus10003678.g ID=Lus10003678.BGIv1.0 annot-version=v1.0 ATGAAGTTCAAGGCGTTCCTCACGGAGAACGGAGTCATGTTGTTAGAAAGGAGGTTTCTACCAGCACTGGACAAAATGGGGAAAGTGTGCCATCTTCTTC TCACAAGAGACCATGCAATCTTCCTCCACAACCTCCTCAACGGTGACGGAGTCCAGTGCATTGCACAGTTCAAAAAAGAGGCTCTGTTCGACGACTATCG AATCTCTAGCCAGAACGAAGATCGGATCGCCTTCGCCCTTGACCTTTCACTCCTTCAGCGAGCAGTCCGAAGCAGTGTCAGCATTTGCAGCGAGTTCAGC ACTACCGGATCTCCTTCCAACCGTCTCCAAATCAAGCTAGTGAAGAAACTCCCCCCCAAATGCACTCAGCCAATGCCGTATCTCACATTCGAAACTAAGG GACACAAAGCTGCAGTAATCCAAGACGTTCCCATTTCGAAGCCACTGTCGAGAGCTCAATTGCTGGAGCTTCAAACTGCTCTCGACATGGCGCAAGAACT CCCCCCGACTTTGGTTCAGGTCCCCGATTTGAATCAGCTGCAGAATTATGTAGACCGGATGAGACACGTAGGCGATCTGCTGAATGTTTCCATCACCAAG TACGGAGATCTCCACGTACAAATCTCGACCACTTTGATCACGCTCGGTGCTGAGTTCCGGAAACTGTTGGTGATCGGGGAGAAAGCTGAAGCTCCAGCTC CAGTGGAGGATCAGAATCTCAGCTGCCAAACTCGACACCAGAGGGCGGTTCTGAGAAGGGATGCTCAGGCGGTGCAGGTTAGCGTGAGGCATTTTTCGAA AGCCCTCCAGTGTCATCTTGCTAAGCCGGATTGTACTTTCTATGGTATCGCACTTGAGGGCGCTTGCTTGACTGTGATATTCCAGTTCTTCGTTCCGGGC ACTCATCAGACTGATAAATCGATCAGCTTGCACTGCAGGCTACCTGTGCTTGATCCTGGTACCAACTGA
AA sequence Show only first row Show all	>Lus10003678 pacid=23179487 polypeptide=Lus10003678 locus=Lus10003678.g ID=Lus10003678.BGIv1.0 annot-version=v1.0 MKFKAFLTENGVMLLERRFLPALDKMGKVCHLLLTRDHAIFLHNLLNGDGVQCIAQFKKEALFDDYRISSQNEDRIAFALDLSLLQRAVRSSVSICSEFS TTGSPSNRLQIKLVKKLPPKCTQPMPYLTFETKGHKAAVIQDVPISKPLSRAQLLELQTALDMAQELPPTLVQVPDLNQLQNYVDRMRHVGDLLNVSITK YGDLHVQISTTLITLGAEFRKLLVIGEKAEAPAPVEDQNLSCQTRHQRAVLRRDAQAVQVSVRHFSKALQCHLAKPDCTFYGIALEGACLTVIFQFFVPG THQTDKSISLHCRLPVLDPGTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52530			unknown protein		Lus10003678 [exp]	0	1
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	2.4	0.8745
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	3.2	0.8605
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	5.7	0.8259
AT4G12340			copper ion binding (.1)		Lus10024588 [exp]	6.0	0.8581
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	8.5	0.8507
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	10.2	0.8222
AT1G28120			unknown protein		Lus10030429 [exp]	10.4	0.8324
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10037533 [exp]	10.5	0.8483
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10009873 [exp]	12.2	0.8283
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	14.0	0.8213

Compare expression of checked genes

Lus10003678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.