Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01690 605 / 0 ARM repeat superfamily protein (.1.2) AT1G36160 208 / 3e-56 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 184 / 5e-48 ACC2 acetyl-CoA carboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001587 [exp] 779 / 0 AT2G01690 1096 / 0.0 ARM repeat superfamily protein (.1.2) Lus10003702 [exp] 774 / 0 AT2G01690 1093 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034578 [exp] 674 / 0 AT2G01690 1164 / 0.0 ARM repeat superfamily protein (.1.2) Lus10021813 [exp] 466 / 1e-151 AT2G01690 1112 / 0.0 ARM repeat superfamily protein (.1.2) Lus10024748 [exp] 228 / 1e-62 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10006934 [exp] 223 / 7e-61 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106700 [exp] 625 / 0 AT2G01690 1076 / 0.0 ARM repeat superfamily protein (.1.2) Potri.008G134600 [exp] 611 / 0 AT2G01690 1070 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G169100 [exp] 220 / 3e-60 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 219 / 8e-60 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08326 [flax] [poplar] ACC_central Acetyl-CoA carboxylase, central region PF11916 [flax] [poplar] Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p binding
Representative CDS sequence Show only first row Show all	>Lus10003679 pacid=23179491 polypeptide=Lus10003679 locus=Lus10003679.g ID=Lus10003679.BGIv1.0 annot-version=v1.0 ATGGAAGCAACCATCAGTGCCCGAAAAGCAGTCTCTACAGCCTCCACGACATTCATTCCCTCCTTGAATAATTCCAGTTCTAATTCCGCATACTCAGTCC CGCTTCGAGATAGTAGGGTTCGCTATTATGCTTGTGAAGCGGTATATAACATTGCGAAGGTTGTGAGAGGGGATTTCATAGTGTTCTTTAATCAAATATT CGATGCTCTCCGCAAGCTTTCTGCAGATTCAGATGCCAATGTACAAAGTGCTGCACATCTGTTAGATCACCTTGTTAAAGTGAGTTCCTTTCTCGTTAGG TGGACTCAAACCTTTCTCGGATGCGTACGACATCGTCAGGAGAGTGATCAGTTCAGCATTGAAGAATTTGTTTCTCTGCTTAGGGAACATATGAACGTGC TGAATCCGTACATGCGCCAATTCTTGTCTGTAGATTATGGTGGCATGGCCGAGATATTGGTGCAGAGGGCAGCTGCTTCTGACGAATTTACTCGGTTGAC AGCTATTACATGGATAAACGAATTTGTTAAACTTGGCGGGGACCAACACGTGCCGTACTATGCTGATATTCTTGGTGCAATTTTGCCTTGCATATCGGAC AAAGAAGAGAAGATTAGAGTGTTGAGTTTGTATCTGAACTTGATTTCGCCATTTGGATTCAATTCTGAAGTGTACTATGCTGATCATTTGTTTTTCTATC TCTTAATTGAGGTTGCCCGTGAAACGAATGAAGAGCTTTGGGCAATACAAACTGACCCCACAGAAGGGTTTGATGTTGGTGCGATCCTCTCTATCGCAAG AAGACAACTATCTAGCGAGTCTGAGGCTACACAAATTGAGTCATTGCACTGGATTTCTGCGCTTTTGAACAGACATCGGGCTGATGTCTTGAACTTTCTT GAGGACATATTTGTCCGTCTTTTGAAAGCACTATCAGATCCTTCTGATCAGGTAGTCCTGCTTGTTCTCGAGGTTCATGCATGCATTGCCAAGGAGCCAC AGCATTTCCGCCAGCTAGTTGTCTTCTTGATGCACAGTTTCCGCGTTGATACTCCTCTTCTGCAGAAGCGTGGCGCATTGATCATTCGACGTCTTTGTAT GCTTCTAGATGCTGAAAGGGTGTACAAGGAACTATCTAAAATACTCGAGGGGGAAGCCGACCTGGATTTTGCTTCGACGATGGTTCAGATGTACCAGCAT GACAGTGTGGTGATACAGTCGCTATTAGAGGATGATATCAATGTGAAGTTCTTGGTGCAACCGGACAAACTTATTCGTTTGCTCGAGACGCCTATTTTTG CTTACCTAAGGCTGCAGCTCCTTCAGCCTGGAAGATACACATGGTTGTTAAAAGCCTTGTATGGTCTCCTGATGTCGCTTCCTCAGCAAAGCGCCGCTTT CAAGATTCTGAGGACTCGATTGAAGATGGTACCTTCGTATTCCTTCAGTGGTGGGGACCAGATCAAGTGGACGTCTTCAGGGAACCCGAATTCTCGAAGT AACGGCTCACTAGTCTCGGAGGATGGCGATGTAGCAGTGCATCAGGAGGTGGGAATTTCTAATTCTCAGAACGTAATTAACTTCACCTCGAACTTGCAGC AGTTTGAGCAAGTTCAATGCCAACATCGTGTCCACACTAGAAAGCGTGCACATTCTCGGAACACTTCTGCTTCCACTTCATCCGTGAAGCTGGCTTTGAA GGCAAGTCAACTCCCCGAACAAACAAAACTGAGTGAACTTCGTTCTACTATCGCTAGAAGCCTCTCAGAGTTGGAGATGTTTGCTGAAGATGGGGAGAAC ATTGACACTCCAAAGCTAAAAAGTGCCATTAATGAACGAATGGAGGATCTTGTCAGTGCACCTTTAGCAGTTGAAGATGCCCTTGTGGGCCTCTTTGATC ACAGTGATCATACACTTCAAAGGCGGGTCGTCGAAACGTATGTTCGTAGGCTATACCAGGGCAGTGTGAGAATGCAGTGGGATAGATCTGGCCTTATTGC ATCATGGGAGTTCGTGGAAGAGCATATTGAAAGAAAGAATGGTCGGTATCAACGATTGCATATCTGTACAGCAAAGAGGTCAACCAAACAGACCAATCCT CTAACAGGTCCCATAAATTTAACCTAG
AA sequence Show only first row Show all	>Lus10003679 pacid=23179491 polypeptide=Lus10003679 locus=Lus10003679.g ID=Lus10003679.BGIv1.0 annot-version=v1.0 MEATISARKAVSTASTTFIPSLNNSSSNSAYSVPLRDSRVRYYACEAVYNIAKVVRGDFIVFFNQIFDALRKLSADSDANVQSAAHLLDHLVKVSSFLVR WTQTFLGCVRHRQESDQFSIEEFVSLLREHMNVLNPYMRQFLSVDYGGMAEILVQRAAASDEFTRLTAITWINEFVKLGGDQHVPYYADILGAILPCISD KEEKIRVLSLYLNLISPFGFNSEVYYADHLFFYLLIEVARETNEELWAIQTDPTEGFDVGAILSIARRQLSSESEATQIESLHWISALLNRHRADVLNFL EDIFVRLLKALSDPSDQVVLLVLEVHACIAKEPQHFRQLVVFLMHSFRVDTPLLQKRGALIIRRLCMLLDAERVYKELSKILEGEADLDFASTMVQMYQH DSVVIQSLLEDDINVKFLVQPDKLIRLLETPIFAYLRLQLLQPGRYTWLLKALYGLLMSLPQQSAAFKILRTRLKMVPSYSFSGGDQIKWTSSGNPNSRS NGSLVSEDGDVAVHQEVGISNSQNVINFTSNLQQFEQVQCQHRVHTRKRAHSRNTSASTSSVKLALKASQLPEQTKLSELRSTIARSLSELEMFAEDGEN IDTPKLKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQGSVRMQWDRSGLIASWEFVEEHIERKNGRYQRLHICTAKRSTKQTNP LTGPINLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	3.0	0.9937
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	4.2	0.9937
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	5.2	0.9937
					Lus10001790 [exp]	6.0	0.9937
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	6.2	0.9644
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	6.5	0.9431
AT5G13660			unknown protein		Lus10005963 [exp]	6.7	0.9937
					Lus10006164 [exp]	7.3	0.9937
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	7.9	0.9937
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	8.5	0.9937

Compare expression of checked genes

Lus10003679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.