Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01818 184 / 6e-58 PLATZ transcription factor family protein (.1) AT3G60670 104 / 5e-27 PLATZ transcription factor family protein (.1) AT2G12646 100 / 5e-25 PLATZ transcription factor family protein (.1) AT1G76590 96 / 1e-23 PLATZ transcription factor family protein (.1) AT4G17900 94 / 3e-23 PLATZ transcription factor family protein (.1.2) AT1G31040 93 / 1e-22 PLATZ transcription factor family protein (.1) AT5G46710 91 / 5e-22 PLATZ transcription factor family protein (.1) AT1G21000 91 / 6e-22 PLATZ transcription factor family protein (.1.2) AT1G32700 91 / 7e-22 PLATZ transcription factor family protein (.1.2) AT1G43000 88 / 8e-21 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028998 [exp] 454 / 4e-164 AT2G01818 180 / 2e-56 PLATZ transcription factor family protein (.1) Lus10013242 [exp] 249 / 2e-82 AT2G01818 213 / 3e-68 PLATZ transcription factor family protein (.1) Lus10030763 [exp] 232 / 2e-75 AT2G01818 202 / 3e-64 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 108 / 2e-28 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 106 / 2e-27 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 102 / 1e-25 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 101 / 5e-25 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10027735 [exp] 97 / 3e-24 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 94 / 7e-23 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137300 [exp] 189 / 5e-60 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.010G103500 [exp] 181 / 4e-56 AT2G01818 217 / 1e-70 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 106 / 2e-27 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 103 / 1e-26 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 100 / 2e-25 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 99 / 3e-25 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 99 / 4e-25 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 98 / 1e-24 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 98 / 2e-24 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 97 / 4e-24 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10003680 pacid=23179492 polypeptide=Lus10003680 locus=Lus10003680.g ID=Lus10003680.BGIv1.0 annot-version=v1.0 ATGACGACGATGACGATGAAGAAGGAGGAGGATGACGACAAGAGATTAAGCAGCAGCATGTGGATCGATACGCTACTGAGTAGCGAATTCTTCGTTCCGT GCGAGCGTCACATGGAGCTGAGGAAGAACGAGAAGAACGTTTTCTGTTTGGATTGCAGAGCTCTATTATGCAGGCACTGCTCGTCCAATTCCTGCAACTT CAATCGCCATCGCCACATCCAGATCCGCAAGTACGTCTACCAGGACGTCGCCGGCCTCCCTGGCATCCAGAACTACCTCGACTGCTCCCTAATTCAGACG TACAAGATCAACGGGGAGATGGCAGTGCATCTGAGTCCGAGGCCGATTCGGGAGGATGCGAAGCCGTCGACGAAGGCGAAATTCGGGGCGGCGTGTCTGG TTTGCGGGAGGTATCTGCAGGACTTGCCAAACAAATTCTGCTCCATTGCTTGTAAGATTTCAGGAGTTGGACTTTGCATAGTGGGGGATGAAACGGCGCC CTTGCCAAGGGAAGAAGAACCGCCCGCCAAAAGGCTGTGCATGGAAGCTAATAACGTGGCGGGAAATGAAAATGAGGGGTCAGCTTCAGCACTAACGGAA ACGACGTCGGGTGATGTGGAGCAGCAAGAAGAGGAACAAGGAGAGGGAGTTGCCGTTAGGGAGACGGAATTGTTGACGGCGCCGTCAGAGTTTTTCCCGG GAAGTTTTAGGAGACGGTCGCACCCGAGAAAGGGCGTACCTTGTAGGTCCCCTCTTTTTTAA
AA sequence Show only first row Show all	>Lus10003680 pacid=23179492 polypeptide=Lus10003680 locus=Lus10003680.g ID=Lus10003680.BGIv1.0 annot-version=v1.0 MTTMTMKKEEDDDKRLSSSMWIDTLLSSEFFVPCERHMELRKNEKNVFCLDCRALLCRHCSSNSCNFNRHRHIQIRKYVYQDVAGLPGIQNYLDCSLIQT YKINGEMAVHLSPRPIREDAKPSTKAKFGAACLVCGRYLQDLPNKFCSIACKISGVGLCIVGDETAPLPREEEPPAKRLCMEANNVAGNENEGSASALTE TTSGDVEQQEEEQGEGVAVRETELLTAPSEFFPGSFRRRSHPRKGVPCRSPLF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	0	1
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	1.4	0.8503
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	2.8	0.8438
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	3.5	0.8464
					Lus10000475 [exp]	4.5	0.7746
AT2G35710			Nucleotide-diphospho-sugar tra...		Lus10008518 [exp]	5.2	0.8053
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10003362 [exp]	7.0	0.8144
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	7.3	0.8476
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	9.4	0.8126
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	13.3	0.7837
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	15.2	0.8318

Compare expression of checked genes

Lus10003680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.