Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24625 107 / 1e-28 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G66140 99 / 4e-25 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT5G25160 85 / 5e-20 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 81 / 2e-18 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 76 / 9e-17 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G57520 70 / 4e-15 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT5G14010 62 / 4e-12 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 61 / 2e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G05120 60 / 4e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 59 / 3e-10 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028997 [exp] 223 / 3e-74 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10013243 [exp] 140 / 2e-40 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 140 / 2e-40 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10014350 [exp] 80 / 4e-18 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10026597 [exp] 77 / 1e-17 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10010388 [exp] 76 / 2e-16 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10006960 [exp] 70 / 9e-15 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10025471 [exp] 69 / 1e-14 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10018328 [exp] 68 / 4e-14 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138000 [exp] 123 / 1e-34 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.010G102700 [exp] 123 / 2e-34 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.017G134800 [exp] 108 / 7e-29 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.004G084100 [exp] 107 / 2e-28 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.003G180600 [exp] 81 / 5e-18 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G047500 [exp] 81 / 6e-18 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G094300 [exp] 74 / 2e-16 AT5G57520 108 / 9e-31 zinc finger protein 2 (.1) Potri.018G021400 [exp] 76 / 3e-16 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G093300 [exp] 74 / 3e-16 AT1G24625 89 / 6e-22 zinc finger protein 7 (.1) Potri.006G261700 [exp] 75 / 6e-16 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003681 pacid=23179465 polypeptide=Lus10003681 locus=Lus10003681.g ID=Lus10003681.BGIv1.0 annot-version=v1.0 ATGCTCCAACTGAATTTGCAGTTGGTCATTTGTGCTAGCACAGTCATGCACCAACTGAATTCAAGGTCAGATTCGGAGGAGAACCAGTGCGAAAGCAGCA ACCAAGTAGCCACCTCCGGCATATCACCTCAAGAAGAACCATTTCCGGCCGATCCTATCTCCCTAGACTTGTCACTTCAACTGCTGCAATCCCACTACGA GTCCAACGAATCCGATCATCATCATGAGCAGAGTAATTATGATGAAACATCTGCCACTAGAACTGTCCCGCCTCGAGTGTTCTCGTGCAACTACTGCAGA CGTAAGTTCTACAGCTCGCAGGCACTCGGTGGCCACCAGAACGCTCACAAACGCGAGCGAATAATCGCCAAACGGGCAGTGAGGATGGGGTACGCATTCT CTAGGTACAACATGAGCCTTGGCATCCAAGCTCATTCTGCAAGTCATATCTTACCACTCCAGAGGCCACCCCTACCACCATTTGATCATGGTTTCGGGGC TAGATTCGAGCAGAGGTTCTACGAGGAGGAAGAGGAAGTGGGATCATATTGGCCAGGGAGTTTCAGGCAATTTGCTAATAGGAGGCCAAATTACACTACT AGAAGTGATGTTGCTACTTCTTCTTCTTCTTCTTCTTCAGGCCCAGATTTAACTCTCAAGCTATAA
AA sequence Show only first row Show all	>Lus10003681 pacid=23179465 polypeptide=Lus10003681 locus=Lus10003681.g ID=Lus10003681.BGIv1.0 annot-version=v1.0 MLQLNLQLVICASTVMHQLNSRSDSEENQCESSNQVATSGISPQEEPFPADPISLDLSLQLLQSHYESNESDHHHEQSNYDETSATRTVPPRVFSCNYCR RKFYSSQALGGHQNAHKRERIIAKRAVRMGYAFSRYNMSLGIQAHSASHILPLQRPPLPPFDHGFGARFEQRFYEEEEEVGSYWPGSFRQFANRRPNYTT RSDVATSSSSSSSGPDLTLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10003681 [exp]	0	1
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10028997 [exp]	1.0	0.8628
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	3.9	0.8260
					Lus10030126 [exp]	4.0	0.7861
					Lus10032581 [exp]	4.0	0.8258
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	4.9	0.8346
AT3G14880			unknown protein		Lus10039193 [exp]	9.5	0.8024
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	10.7	0.8163
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	15.4	0.7921
AT1G06475			unknown protein		Lus10025392 [exp]	17.4	0.8065
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	19.3	0.7541

Compare expression of checked genes

Lus10003681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.