Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31460 268 / 6e-92 Ribosomal L28 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028995 [exp] 418 / 4e-151 AT4G31460 259 / 1e-88 Ribosomal L28 family (.1) Lus10013249 [exp] 391 / 2e-140 AT4G31460 268 / 6e-92 Ribosomal L28 family (.1) Lus10030771 [exp] 134 / 3e-38 AT1G14740 139 / 1e-36 Protein of unknown function (DUF1423) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006900 [exp] 279 / 7e-96 AT4G31460 268 / 8e-92 Ribosomal L28 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00830 [flax] [poplar] Ribosomal_L28 Ribosomal L28 family
Representative CDS sequence Show only first row Show all	>Lus10003683 pacid=23179483 polypeptide=Lus10003683 locus=Lus10003683.g ID=Lus10003683.BGIv1.0 annot-version=v1.0 ATGGCGTTTCGGGGAAGGGAGATGATGAACAAAGTCCTGAGAAAAGTAGGAGGCAAGGGAATGCCGCCTGCAGTCAAGGAATCCCTGAAGAAATCAATAC CTGACAAGAAGGTGGTCATGGGTAGAGCTCAGCGTGGTCTGTTTGCCGGAAAACATATTCAATTCGGTAACCAGATCAGTGAAGATGGTGGAAACAAGAC TAGGAGAAACTGGAAGCCGAACGTCCAGGAGAAGAGGCTATTCAGCTACATTCTGGACCACCAAATACGAGTAAAGGTCACCACACACGCCCTCCGCTGC ATAGACAAGGCGGGAGGAATCGACGAGTATCTGCTCAAGACACCATACCAGAAGATGGACACCGAGATGGGGCTCTTCTGGAAAGCCAAGATAGAGAAGT CGTACGAAGACTTGGCGAAGTCGGACGTGGTTTTCTTCTCTCCCGAAGACGAAGAGAAGTTTGCAGAAGGGTTCAGGGATCTGAAACTGTCGGAACGAGA GGCTCGCAAGGAGTTCCGGAGGAAGATGTATTCAGAGTTTGTGAAGCATAATAAGCAAGCTGGCGAAGGGAAAGCTCGGGTTAGCTATATCGTTGCGACT GCTGACATGGCTCCTGGAAAGCTTATAGCTAACAGATGA
AA sequence Show only first row Show all	>Lus10003683 pacid=23179483 polypeptide=Lus10003683 locus=Lus10003683.g ID=Lus10003683.BGIv1.0 annot-version=v1.0 MAFRGREMMNKVLRKVGGKGMPPAVKESLKKSIPDKKVVMGRAQRGLFAGKHIQFGNQISEDGGNKTRRNWKPNVQEKRLFSYILDHQIRVKVTTHALRC IDKAGGIDEYLLKTPYQKMDTEMGLFWKAKIEKSYEDLAKSDVVFFSPEDEEKFAEGFRDLKLSEREARKEFRRKMYSEFVKHNKQAGEGKARVSYIVAT ADMAPGKLIANR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31460			Ribosomal L28 family (.1)		Lus10003683 [exp]	0	1
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	2.4	0.8033
AT2G03870		EMB2816	EMBRYO DEFECTIVE 2816, Small n...		Lus10035639 [exp]	7.1	0.7629
AT2G18110			Translation elongation factor...		Lus10013555 [exp]	9.2	0.7475
AT1G16000			unknown protein		Lus10023116 [exp]	13.7	0.7206
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	15.5	0.7225
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	15.9	0.7583
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	17.5	0.7488
AT1G11760		MED32	unknown protein		Lus10033295 [exp]	21.7	0.7339
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	23.7	0.7419
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	27.4	0.7451

Compare expression of checked genes

Lus10003683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.