Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17760 912 / 0 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G45990 56 / 9e-08 crooked neck protein, putative / cell cycle protein, putative (.1) AT1G04080 56 / 1e-07 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G51110 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G24270 47 / 7e-05 EMB140 EMBRYO DEFECTIVE 140 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028994 [exp] 1394 / 0 AT1G17760 957 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022874 [exp] 59 / 2e-08 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10024952 [exp] 55 / 2e-07 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10005168 [exp] 47 / 5e-05 AT4G24270 764 / 0.0 EMBRYO DEFECTIVE 140 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106200 [exp] 1044 / 0 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G229732 [exp] 50 / 7e-06 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Potri.002G257100 [exp] 49 / 2e-05 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.014G192800 [exp] 46 / 0.0001 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05843 [flax] [poplar] Suf Suppressor of forked protein (Suf)
Representative CDS sequence Show only first row Show all	>Lus10003684 pacid=23179461 polypeptide=Lus10003684 locus=Lus10003684.g ID=Lus10003684.BGIv1.0 annot-version=v1.0 ATGGCGTCGCCGGTTGAGCTGAAGGATGCGTCCAAGGTTAAAGAGCAGGAGACTGAAACAGCTGACAAGTACAATGTAGAGGCTGCAGAAGTCTCAGCAA CTCGAGCTCAGCGTATGCCGATAGCTCAGGCTGCACCTATCTACGAACAACTCCTGCAGTTGTTCCCTACAGCTGCAAAATTTTGGAAACAATATGTGGA GGCCTATATGGCTGTGAATAACGATGATGCTACAAAACAGATATTCAGCCGGTGTTTGCTGAACTGTTTTCAAGTTCCTCTATGGAGGTGCTACATTCGA TTCATCAGGAAAGTCAATGAGAAGAAAGGTGCCGAAGGCCTAGAAGAAACAAGAAAAGCTTTTGATTTTATGCTGAGTCATGTAGGGTCGGACATTGCCT CTGGGCCTTTATGGTTGGAGTACATTACATATCTGAAGTCATTACCGGGGCAGCTGCCGCAGGAAGAGTCACAACGAATGACTGCGTTAAGGAAAATATA CCAAAGCGCAATTGTTACACCTATCCATCACGTTGAGCAGCTCTGGAGGGAATATGAAGTTTTTGAAAACTCTGTCAATCGGCAATTGGCCAAAGGATTG ATATCCGAGTACCAATCAAAATACAACAGTGCAAGGGCTGTATACAGAGAGCGGAAAAAATATGTTGACGAGATTGATTGGAACATGCTGGCTGTTCCAC CAACTGGCTCTGGCAAGGAAGAGCAACAATGGACAGCATGGAGGAGACTTTTGGCCTTTGAAAAGTCAAATCCTCAACGGATTGATAGTATTTCCTCAAA CAAACGTATCATGTTCAGCTATGAACAGTGCCTCATGTATTTGTACCATTATCCTGATATATGGTATGATTATGCTACTTGGAATGCTAAAAGTGGCTCT GTAGATGCTGCTATTAAAGTATATCAGCGAGCTCTGAAGGCTCTCCCAGATTCAGAGCTGCTGAAGTATGCTTATGCCGAGTTGGAGGAGTCTCGTGGAG CTATCCAGCCTGCAAAGAAAGTTTATGAAAGCATTTTGGGTGATGGTACTAATGCAAATGCACTTGCATACATTCAGTTTATTCGGTTTTTAAGAAGGAA TGAAGGAGTAGAAGCTGCTCGGAAGTACTTCCTAGATGCCAGGAAATCCCCAAACTGCTCTTACCAGGTCTATGTTGCTTATGCCTCGATGGCATTTTGT TTGGACAAGGACCCAAAGATTGCACATAACGTTTTTGAAGCAGGAATGAAGCGCTTCATGCAGGAGCCAGCATACATTCTTGAATATGTGGATTTCTTGT ATCGTATGAATGACGACAGAAACATCCGAGCACTATTTGAGCGGGCATTAAGCTCTCTGCCGTTGGAGAAATCTGTTGAGGTTTGGAAACGTTTTGTCCA ATTTGAACAGACATATGGAGATCTAGCTAGCATGCTGAAGGTTGAACAAAGAAGAAAAGAAGCATTTTCAAATGTAGACGATGACGCTGGATCAGTGATG GATGGTTCATTGCAAGAAGTTGTGGCACGTTACAGTTTTATGGATCTCTCACCATGTGCCCCCAAGGATATAGATCAGCTAGCCCGGCAAGAGTGGCTTG CTAAGAACATGGGTAAGAAGTCTAGTATGATGTCCGCTGGACCTAGCAAGGGAGCAGGTACATTTCCGCAATCTCGTAATCCAGAGAAGAACCCTCCTCC TGCAAATCTCGCCAGCAACTCGAATCTATCCACAAAAGTCGTGGATCCAGACCATTCCCGTACGGTAGCTTACGACCCGAGACAAAAACCCGGTACATTT GATGAAGTACTGAAAGCTACACCACCTGCACTGCTATCATTCCTCTCGAACTTACCCACAGTCGAAGGTCCATCGCCGAATGTGGATATCGTACTCTCCA TCTGCCTACAGAGCGAAGTTCCTGCCGCGGCAGCTCCTGGTAAGGGCAGCAAGGGAGGAGGGAGCCATCAGGCTACAAGCGACCTTTCCGGTTCGACCAA GTCCCACCCGACTCCGAGCGGAGGCTCGTCTTTCAAGCATCAGAGGGACAACAGACAGTCCGGGAAAAGGAAGGATTTCAGACGGCAAGAGGAAGAGGAG AGCTCTACGGTGCAAAGCCAGCCTGCACCGCCGCGAGATGTTTTCCGTCTACGACAGATTCGGAAAGCCAGCAGAATAGGCGCAGTGGCCGGTGCTTCGC AGACCGGGTCGACCTCGTATGGAAGTGCATTCTCCGGCGATCTCTCGGGAAGCACTGGCTAA
AA sequence Show only first row Show all	>Lus10003684 pacid=23179461 polypeptide=Lus10003684 locus=Lus10003684.g ID=Lus10003684.BGIv1.0 annot-version=v1.0 MASPVELKDASKVKEQETETADKYNVEAAEVSATRAQRMPIAQAAPIYEQLLQLFPTAAKFWKQYVEAYMAVNNDDATKQIFSRCLLNCFQVPLWRCYIR FIRKVNEKKGAEGLEETRKAFDFMLSHVGSDIASGPLWLEYITYLKSLPGQLPQEESQRMTALRKIYQSAIVTPIHHVEQLWREYEVFENSVNRQLAKGL ISEYQSKYNSARAVYRERKKYVDEIDWNMLAVPPTGSGKEEQQWTAWRRLLAFEKSNPQRIDSISSNKRIMFSYEQCLMYLYHYPDIWYDYATWNAKSGS VDAAIKVYQRALKALPDSELLKYAYAELEESRGAIQPAKKVYESILGDGTNANALAYIQFIRFLRRNEGVEAARKYFLDARKSPNCSYQVYVAYASMAFC LDKDPKIAHNVFEAGMKRFMQEPAYILEYVDFLYRMNDDRNIRALFERALSSLPLEKSVEVWKRFVQFEQTYGDLASMLKVEQRRKEAFSNVDDDAGSVM DGSLQEVVARYSFMDLSPCAPKDIDQLARQEWLAKNMGKKSSMMSAGPSKGAGTFPQSRNPEKNPPPANLASNSNLSTKVVDPDHSRTVAYDPRQKPGTF DEVLKATPPALLSFLSNLPTVEGPSPNVDIVLSICLQSEVPAAAAPGKGSKGGGSHQATSDLSGSTKSHPTPSGGSSFKHQRDNRQSGKRKDFRRQEEEE SSTVQSQPAPPRDVFRLRQIRKASRIGAVAGASQTGSTSYGSAFSGDLSGSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	0	1
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	1.0	0.8460
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	4.6	0.8402
AT1G72390			unknown protein		Lus10008132 [exp]	5.1	0.7987
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	7.1	0.8299
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	7.1	0.7921
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	7.6	0.8437
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	8.1	0.7434
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	8.9	0.8308
AT5G24500			unknown protein		Lus10015567 [exp]	11.0	0.7183
AT1G17500			ATPase E1-E2 type family prote...		Lus10037622 [exp]	11.7	0.7802

Compare expression of checked genes

Lus10003684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.