Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09795 578 / 0 HISN1B, ATATP-PRT2 ATP phosphoribosyl transferase 2 (.1) AT1G58080 569 / 0 HISN1A, ATATP-PRT1 ATP phosphoribosyl transferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028993 [exp] 716 / 0 AT1G09795 558 / 0.0 ATP phosphoribosyl transferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057200 [exp] 573 / 0 AT1G09795 565 / 0.0 ATP phosphoribosyl transferase 2 (.1) Potri.004G222400 [exp] 542 / 0 AT1G09795 552 / 0.0 ATP phosphoribosyl transferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0089 [flax] [poplar] GlnB-like PF08029 [flax] [poplar] HisG_C HisG, C-terminal domain CL0177 [flax] [poplar] PBP PF01634 [flax] [poplar] HisG ATP phosphoribosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003685 pacid=23179471 polypeptide=Lus10003685 locus=Lus10003685.g ID=Lus10003685.BGIv1.0 annot-version=v1.0 ATGTCCCTTCCAGCTCCTCCTTCTTCAAGCCGCTCTCTTTTCCCCATGCGCCGCCCTGTTATGTATACTTCTACCTCCGGCGGCTTTAGCACCAGAACAA CTGTCCGTTGCTGTGTATTACAGCCTCAGCTTTTGTCCAATGGCGGAGCAGGCCCTAGAGCCTCTGCCCGAAACGAACTCCGCCTTGGTTTGCCTAGCAA AGGCCGTATGGCCGAAGACACTCTTGATCTCCTTAAGGATTGTCAATTATCGGTCCGCAAGGTCAATCCTCGACAATATGTTGCTGACATTCCTCAGCTG TCGAATTTGGAAGTCTGGTTCCAGCGACCGAAAGACATTGTGAGGAAGTTGTTGTCAGGAGATTTGGACCTTGGAATCGTGGGCCTTGATATAGTCGGTG AATTTGGTCAGGGAAGTGAAGACCTTATCATTGTACACGATTCACTCGAGTATGGGGATTGCCGTTTATCCATAGCTATACCGAAGTATGGCATCTTTGA GAACATAAACTCTCTGGAGGAGCTAGGCCGAATGCCTCAATGGACAGCTGACAAACCTATGCGAGTTGCCACTGGATTCACTTACCTAGGACCTAAATTT ATGAGGGAGAAGGGACTGAAGCATGTGGCTTTTTCAACTGCTGACGGCGCATTAGAAGCCGCACCAGCGATGGGCATAGCTGATGCGATTCTAGACCTTG TTAGCAGTGGCACTACTCTGAGAGAAAATAATTTGAAAGAAATTGAAGGTGGAATTGTATTGGAGAGTCAGGCTGTTCTTGTTGCAAGCAAGAAATCGCT AGTGCACCGGAAAGGCTTGCTGGACACAACACATGAAATCATTGAAAGATTGGAGGCACATTTGAGGGCAGCCGGTCAATTCACGGTGGTTGCAAACATG AGAGGAAATAGTGCCGATGAAGTGGCAGAGCGTGTACTGAGCCAGCCATCTTTGGCCGGGTTGCAGGGACCAACTGTAAGTCCGGTTTTCTGCAACCGGA ACGGAGATGTCGTGGTCGACTATTACGCAATAGTCATTTGTGTACCTAAGAAGGCATTGTACAAGTCCGTGCAGCAGCTTAGAGCGATTGGAGGCAGTGG AGTTCTGGTTTCGCCGTTGACTTACATATTCGATGAGGAGACACCAAGATGGCGTGAACTCCTCGGAAAACTTGGCTTGTAA
AA sequence Show only first row Show all	>Lus10003685 pacid=23179471 polypeptide=Lus10003685 locus=Lus10003685.g ID=Lus10003685.BGIv1.0 annot-version=v1.0 MSLPAPPSSSRSLFPMRRPVMYTSTSGGFSTRTTVRCCVLQPQLLSNGGAGPRASARNELRLGLPSKGRMAEDTLDLLKDCQLSVRKVNPRQYVADIPQL SNLEVWFQRPKDIVRKLLSGDLDLGIVGLDIVGEFGQGSEDLIIVHDSLEYGDCRLSIAIPKYGIFENINSLEELGRMPQWTADKPMRVATGFTYLGPKF MREKGLKHVAFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGIVLESQAVLVASKKSLVHRKGLLDTTHEIIERLEAHLRAAGQFTVVANM RGNSADEVAERVLSQPSLAGLQGPTVSPVFCNRNGDVVVDYYAIVICVPKKALYKSVQQLRAIGGSGVLVSPLTYIFDEETPRWRELLGKLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	0	1
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	1.4	0.9129
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	3.2	0.8672
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	3.5	0.8644
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	3.5	0.8608
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	4.8	0.7869
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	5.5	0.8425
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10020258 [exp]	5.8	0.7660
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	5.9	0.8570
AT2G40435			unknown protein		Lus10010217 [exp]	7.4	0.8154
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10023572 [exp]	7.7	0.7709

Compare expression of checked genes

Lus10003685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.