Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01830 1280 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 936 / 0 AHK2 histidine kinase 2 (.1) AT1G27320 914 / 0 AHK3 histidine kinase 3 (.1) AT2G17820 171 / 3e-43 AHK1, ATHK1 histidine kinase 1 (.1) AT5G10720 157 / 4e-39 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G47430 112 / 9e-25 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT1G66340 110 / 1e-24 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 97 / 2e-20 ERS1 ethylene response sensor 1 (.1) AT4G18130 67 / 8e-11 PHYE phytochrome E (.1) AT3G23150 60 / 6e-09 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028992 [exp] 1944 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 1404 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 1403 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10012325 [exp] 896 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10015773 [exp] 895 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10006370 [exp] 889 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10037032 [exp] 716 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10041891 [exp] 159 / 3e-39 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10028438 [exp] 152 / 4e-37 AT2G17820 1553 / 0.0 histidine kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102900 [exp] 1413 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 1394 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 950 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 919 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 900 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.007G056400 [exp] 163 / 1e-40 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 162 / 2e-40 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.006G270500 [exp] 150 / 1e-36 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.018G011400 [exp] 146 / 1e-35 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.002G201500 [exp] 135 / 1e-32 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10003686 pacid=23179494 polypeptide=Lus10003686 locus=Lus10003686.g ID=Lus10003686.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAGCTACAGCAGCAAATCAGCCAAATCCACAAGCAGTTTGCTGGTAAGGTTGAGAAGAGGGCAAAAATGGGGGGTGGTGGTAGTGGTAGTA AGAGAGCATTCTCAGTTCAGGCGTACAGGCATTGGATTCCCAAGGGATTGTTTGTGTGGATCTTGATGATTTGTCACGGCAGCATTTGGCTGTTCAATTC CATGGAGGATGATAATAAGCTGAGGAGGAAGGAATTGCTTGGGAGTATGTGTGATCAGAGGGCTAGGATGTTGCAGGACCAGTTCATTGTTAGTGTTAAT CATGTTCATGCTTTGGCCATCCTTGTTTCTTCTTTCCATTACTTCAAGAACCCTTCTGCTATTGACCAGGAAACGTTTGCAGACTATACTGCAAGAACAG CTTTTGAGCGGCCATTGCTGAGTGGGGTCGCCTATGCAGAAAGAGTGCCAAACTCTGAGAGGGAAGAGTTTGAAAAGAAGCATGGTTGGACGATAAAGAC AATGGAGAAGAGGGAGGCTTCATCCCTACGGAATGAGTATGCACCAACGATATTAACTCAAGAAACTGTCTCTTACCTTCAGTCCATTGACATGATGTCT GGAGAGGAGGATAGGGAGAACATACTGCGTGCTCGGTCCACTGGGAAAGCTGTCATTACGGGACCTTTCAGGTTGCTTGGCTCGCATCATCTCGGTGTAG TGTTGACATTCCCGGTTTACAAATCTAAGCTTCCTCCGTCTCCTACGATAGAGCAGCGAATTAAAGCAACTGCAGGGTATCTTGGCGGTGCCTTTGATGT CGAGTCCCTAGTTGACAACTTACTCGGACAGCTTGCTGGGAATCAAGAAATCTTGGTGCATGTTTATGATGTCACCAACTCATCTGATCACTTGATCATG TATGGTCAAGAGAATCAGGAAGGTGACAAGTCGCTTGTACTCGAGAGTAAACTTGATTTTCGGGATCCATTCAGAAGACATAAGATGATATGCAGATACC ATGAGAAGGCACCGGTGTCAATGTCAACAATCAGCCCGGCGTTATTTGTCTTCGTGATAGGTCTATTAGTAGGCTACATCTTATACAGTGCAGGGACTCA CATTGTGAAAGTTGAGGATGATTTCAATGAAATGGAAGAGCTGAAAGGCCGAGCAGAAGCTGCTGATGTTGCAAAATCACAGTTTCTGGCTACAGTCTCA CATGAAATCAGAACTCCGATGAACGGCGTCCTTGGGATGCTTGCGCTGCTACTTCATACCGATCTTAGTTCAACGCAGAGAGATTATGCTCAAACTGCAC AGGCCTGTGGGAAGGCATTGATCACATTAATAAACGAGGTTCTGGACCGGGCCAAAATCGAAGCTGGGAAGTTAGATCTGGAAGCTGTCCCGTTCAACCT TCGAGCTATAACAGATGATGTCCTTTCTTTGTTCTGTGAGAAGTCTAGGAACAAAGGCATCGAGCTCGCTGTGTTTGTTACCGATAATGTTCCGGAGTTG GTTGTTGGGGATCCTGGAAGATTCAGACAGATCATTACAAACCTTGTGGGAAACTCTGTGAAGTTCACAGAAAGAGGCCATATATTTCTAAGAGTTCATC TAGAGGAGCATGCCACGGCCGTGACAGATACAAGAGCTCGAAAAATTCTAAATGGAGGATCTGATGAAAACATGCTCGTATCCGATGCTCGTAAATTTGA CACTTTAAGTGGTTCCGAGACTGCTGACGACGGGTGGAGCAGCTGGGATACCTTCAAGTACTTTGTTGCAGAAGAAGGTTTCGGACTTAATAACAACGGT TCATCAAATGGAGTAATGCCTTATGAAGCATCAGGGAATGTCACGGTTAGAGTATGCATAGAAGATACCGGAATCGGAATCCCTCTGGGAGCACAGGACC GTGTTTTCACGCCTTTCATGCAGGCCGACAGTTCGATGTCCAGAAATTACGGGGGAACAGGTATTGGTTTGAGCATCAGCAAGTGTCTGGTTGAACTTAT GGGTGGCAAGATCGAGTTTATTAGCCGGCCTCAGGTTGGAAGTAGATTTTGGTTCACTGCTGTCTTAGGGAGGTGCCACAACAAGGATGGCATCAACGAT ATGGACAAGCGAAACTCCGAAGATCTGCCTTCGAATTTCAAAGGACTAAAAGCTGTTATAGTTGATTCCAAACCAGTGAGAGCTGCAGTTACCCGGTACC ACTTGAAGAGGCTTGGCATTGTGGCCGAAATCGCTACCATCTACAAGGTGGTTGGTACCACGTTTCCGGAAGATGGTTCCCTTGCACCCCGAATCAACAG TCAGCCAGACATAGTTCTTGTTGAGAAAGACAACTGGCTTTCCGAGGAAGAGGATGTCAGCTCATCAGTAGACTCGAGACAAAACGGACATCATGCCTAT AAGTTACCAAAGAAGATCCTATTAGCTACAAATATAAGCAAAGCTGAGTTCGAGAAGGCGAAAGAAGCAGGTTTCGAAGACATGGTGATCATGAAGCCTT TGAGAGCCAGCATGGTGGCTGCATGTCTTCAGCAAGTTCTTGGAACAGGAAGGAAAAAGTCGCAAGGAAAAGGCGCGGTGGTGGTCAACGATTCCGGGGG ATCTTGCCTTCAGAATCTACTATGTGGCAAGAAGATTCTGGTGGTCGATGACAACAGAGTAAACCGGAGAGTCGCTGCTGGTGCGTTGAAGAAGTTCGGC GCAAATGTCGAATGCACTGATAGTGGCAAAGCTGCCCTCGAGTTGCTTCAGATACCGCACAGCTTCGATGCTTGCTTCATGGACATTCAGATGCCAGAAA TGGACGGGTTTGAAGCAACGAGGCGCATAAGGGAGATGGAGAAGCAAGCGAACGAGCAGTCGAACGGTAGTGTGCATTTGCCGATATTAGCAATGACAGC TGATGTGATACATGCAACATCAGAGGAATGCTTGAAGTGTGGGATGGATGGATACGTGTCAAAGCCATTTGAGGAACAGAATCTGTATCAGGCAGTTACC AAGTTCTTCCAAGTTTGA
AA sequence Show only first row Show all	>Lus10003686 pacid=23179494 polypeptide=Lus10003686 locus=Lus10003686.g ID=Lus10003686.BGIv1.0 annot-version=v1.0 MGKKLQQQISQIHKQFAGKVEKRAKMGGGGSGSKRAFSVQAYRHWIPKGLFVWILMICHGSIWLFNSMEDDNKLRRKELLGSMCDQRARMLQDQFIVSVN HVHALAILVSSFHYFKNPSAIDQETFADYTARTAFERPLLSGVAYAERVPNSEREEFEKKHGWTIKTMEKREASSLRNEYAPTILTQETVSYLQSIDMMS GEEDRENILRARSTGKAVITGPFRLLGSHHLGVVLTFPVYKSKLPPSPTIEQRIKATAGYLGGAFDVESLVDNLLGQLAGNQEILVHVYDVTNSSDHLIM YGQENQEGDKSLVLESKLDFRDPFRRHKMICRYHEKAPVSMSTISPALFVFVIGLLVGYILYSAGTHIVKVEDDFNEMEELKGRAEAADVAKSQFLATVS HEIRTPMNGVLGMLALLLHTDLSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLDLEAVPFNLRAITDDVLSLFCEKSRNKGIELAVFVTDNVPEL VVGDPGRFRQIITNLVGNSVKFTERGHIFLRVHLEEHATAVTDTRARKILNGGSDENMLVSDARKFDTLSGSETADDGWSSWDTFKYFVAEEGFGLNNNG SSNGVMPYEASGNVTVRVCIEDTGIGIPLGAQDRVFTPFMQADSSMSRNYGGTGIGLSISKCLVELMGGKIEFISRPQVGSRFWFTAVLGRCHNKDGIND MDKRNSEDLPSNFKGLKAVIVDSKPVRAAVTRYHLKRLGIVAEIATIYKVVGTTFPEDGSLAPRINSQPDIVLVEKDNWLSEEEDVSSSVDSRQNGHHAY KLPKKILLATNISKAEFEKAKEAGFEDMVIMKPLRASMVAACLQQVLGTGRKKSQGKGAVVVNDSGGSCLQNLLCGKKILVVDDNRVNRRVAAGALKKFG ANVECTDSGKAALELLQIPHSFDACFMDIQMPEMDGFEATRRIREMEKQANEQSNGSVHLPILAMTADVIHATSEECLKCGMDGYVSKPFEEQNLYQAVT KFFQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	0	1
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	9.3	0.9007
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10021090 [exp]	10.0	0.8712
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	13.2	0.8573
AT2G37670			Transducin/WD40 repeat-like su...		Lus10024399 [exp]	14.5	0.8210
AT3G19200			unknown protein		Lus10019867 [exp]	17.1	0.8914
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	19.9	0.8684
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	20.2	0.8760
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	22.8	0.8983
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	24.0	0.8882
AT2G46850			Protein kinase superfamily pro...		Lus10030181 [exp]	26.0	0.8509

Compare expression of checked genes

Lus10003686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.