Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20350 294 / 4e-101 oxidoreductases (.1.2) AT1G31600 56 / 5e-09 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028991 [exp] 483 / 1e-175 AT4G20350 283 / 5e-97 oxidoreductases (.1.2) Lus10037263 [exp] 53 / 5e-08 AT1G31600 459 / 4e-162 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161600 [exp] 356 / 3e-125 AT4G20350 295 / 3e-101 oxidoreductases (.1.2) Potri.003G106300 [exp] 56 / 6e-09 AT1G31600 450 / 2e-159 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003687 pacid=23179480 polypeptide=Lus10003687 locus=Lus10003687.g ID=Lus10003687.BGIv1.0 annot-version=v1.0 ATGGGGTTTGAAGATTTCCAGGTAGGCAGTGTCCCAACTGTAATGTATCTGCCTCAGTTCGTCACCGAAGCCGACGAGTCCCATCTAATCGCGAAGATTT ATGAATCCCCTACGTCGAAGTGGAAACCATTGAAGAATCGGAGACTGCAGAATTGGGGTGGAGTTGTCCATGAGAAAGGTCTTCTGCCACAAGAACTGCC TCCTTGGTTAACAAAAATCACACAGAGAATATGTGAAGAGTCTGGACTTTTCCCTTCTGCAATTAATCATGTTCTCATCAATGAATATCTCCCCAATCAA GGCATAATGCCGCATCAGGATGGACCGGCTTATTTCCCAGTGGTAGCGATTCTTTCTCTCGGATCCCCTGCTGTTATGGACTTCACTCCCCATTCGAGGT TGCGAATGTGCAGTAATCCTCCAGAGGGTGAAGCTGAAAGTGGAAATCTTGGAAATGAAGCCTCTGAGGCTGAGACGGACAAGTGGATAGATGATCACCA CCCGTTTTCCATTGCATTGATGCCTAGGAGCTTGCTGATATTCAAGGACAATGCCTATTCAGACTACCTGCATGGTATTAAGGACGCAGAGGAGCATGAA TATGACAAGGCTGTAAATGTTGAACAAGCCACGATGCAGGATGCCCCGGATGCAGCGAGGAACAAGGATAAGGCGACCATTCATCGGACTGCAACACGAA TGTCTCTGACTTGTCGATTGGTATTGAAGGTTCATAAGAATCTGTTCAAGTTCTAG
AA sequence Show only first row Show all	>Lus10003687 pacid=23179480 polypeptide=Lus10003687 locus=Lus10003687.g ID=Lus10003687.BGIv1.0 annot-version=v1.0 MGFEDFQVGSVPTVMYLPQFVTEADESHLIAKIYESPTSKWKPLKNRRLQNWGGVVHEKGLLPQELPPWLTKITQRICEESGLFPSAINHVLINEYLPNQ GIMPHQDGPAYFPVVAILSLGSPAVMDFTPHSRLRMCSNPPEGEAESGNLGNEASEAETDKWIDDHHPFSIALMPRSLLIFKDNAYSDYLHGIKDAEEHE YDKAVNVEQATMQDAPDAARNKDKATIHRTATRMSLTCRLVLKVHKNLFKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20350			oxidoreductases (.1.2)		Lus10003687 [exp]	0	1
AT1G28240			Protein of unknown function (D...		Lus10001446 [exp]	11.8	0.7798
AT4G20350			oxidoreductases (.1.2)		Lus10028991 [exp]	17.2	0.7594
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	20.2	0.8053
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	22.2	0.7767
AT3G61610			Galactose mutarotase-like supe...		Lus10012640 [exp]	24.1	0.7919
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	27.0	0.7905
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	32.3	0.7985
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	33.8	0.7942
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	33.8	0.7558
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	38.7	0.7868

Compare expression of checked genes

Lus10003687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.