Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10840 227 / 2e-72 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 50 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 49 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028989 [exp] 358 / 6e-124 AT3G10840 447 / 9e-155 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092900 [exp] 238 / 3e-76 AT3G10840 404 / 3e-137 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059400 [exp] 43 / 8e-05 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 42 / 0.0003 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10003690 pacid=23179469 polypeptide=Lus10003690 locus=Lus10003690.g ID=Lus10003690.BGIv1.0 annot-version=v1.0 ATGGCGTTTTCCGTGCTGGTTACATTGTACTTTGTTGATTTCTTGCAGGCTGAGAAATCGGTCCTTGTCGGGCATTCTGCTGGTTGCCTTGTAGCAGTGG ACACCTACTTCGAGGCTCCCGATCGCGTCGCAGCTCTGATCCTCGTTGCTCCCGCAATATTCGCTCCCAATCCAAGTCAAAATGTTCCGGAAAGAGACAG CCTTACTGAAGGGGATCATGAAAGGGAGAATAATGAAGGCTTTTTAGCACTTTCAGCCATTTTGTGTTCTGCCTTCGGTGTAATGCTGATACGAATGGCG ATCAATCGATTTGGCGTAGCAGCGGTAAAGAACGCGTGGTACGATCCTAGTCAAGTCGGGGAAGAAATCGTGAATGGCTATACAAAGCCGTTAAGAATCA AAGGTTGGGACAAGGCGCTCGCGGAATTCACTGCAGCAACTATTGCAGTCGTCGAGTCTGACCTAAGGTCACCGGGATCGAAAAGACTCCATGAAATTAC TTGTCCTGTTCTGATAGTGACGGGGGACACAGATCGAATCGTGCCTGCTTGGAATGCGAAGAGACTTTTGCAAGCCTCCCGCATGAATAGAAAGTGGAAG AGTTTGTATCTCTTGTTCAGAAGTTTCTCCAGAGAGCTTTCAGTGATATGA
AA sequence Show only first row Show all	>Lus10003690 pacid=23179469 polypeptide=Lus10003690 locus=Lus10003690.g ID=Lus10003690.BGIv1.0 annot-version=v1.0 MAFSVLVTLYFVDFLQAEKSVLVGHSAGCLVAVDTYFEAPDRVAALILVAPAIFAPNPSQNVPERDSLTEGDHERENNEGFLALSAILCSAFGVMLIRMA INRFGVAAVKNAWYDPSQVGEEIVNGYTKPLRIKGWDKALAEFTAATIAVVESDLRSPGSKRLHEITCPVLIVTGDTDRIVPAWNAKRLLQASRMNRKWK SLYLLFRSFSRELSVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	0	1
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	1.0	0.9530
AT2G38780			unknown protein		Lus10019776 [exp]	1.4	0.9179
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10028389 [exp]	2.2	0.8835
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	2.8	0.8839
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	3.5	0.9094
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	4.9	0.8552
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	6.0	0.8811
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	6.2	0.7985
AT1G28540			unknown protein		Lus10042196 [exp]	6.6	0.8339
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	12.4	0.8525

Compare expression of checked genes

Lus10003690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.