Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56460 456 / 1e-161 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 70 / 3e-13 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT1G49670 67 / 8e-12 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G63620 52 / 3e-07 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT4G13010 43 / 0.0002 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028988 [exp] 548 / 0 AT3G56460 508 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10018450 [exp] 72 / 5e-14 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10011233 [exp] 70 / 4e-13 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10027904 [exp] 69 / 1e-12 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10002406 [exp] 68 / 3e-12 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10009658 [exp] 64 / 2e-11 AT5G61510 403 / 5e-142 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10030873 [exp] 59 / 3e-09 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 56 / 3e-08 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10039625 [exp] 54 / 1e-07 AT5G63620 655 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G065700 [exp] 480 / 2e-171 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 80 / 1e-16 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.001G140600 [exp] 79 / 1e-16 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G233800 [exp] 69 / 6e-13 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.009G103000 [exp] 69 / 9e-13 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.016G136100 [exp] 67 / 3e-12 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 60 / 5e-10 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 51 / 3e-07 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G138700 [exp] 51 / 7e-07 AT5G63620 644 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.001G342800 [exp] 50 / 7e-07 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003691 pacid=23179466 polypeptide=Lus10003691 locus=Lus10003691.g ID=Lus10003691.BGIv1.0 annot-version=v1.0 ATGGATGCTCTGGTGTGCGAGAGGCTCGGCGATCCGGCGGCAGACGGCGGCGATTCGCCGATCTTCCTAAAGAAGGACCATCCGATTCCGCCACTGGAAT CTCCGACCTCCGTCAGGGTGAGGGTGAAAGCCACGAGCTTGAACTTTGCGAATTACCTCCAGATACAAGGGAAATACCAGGAGAAGTATCCCTTGCCGTT CATTCCGGGCTCCGATTACTCCGGCGTCGTCGATTCCGTCGGCTCCGGCGTCTCCCTTTTCAAAGTCGGCGACTCTGTTTGCTCCTTCGCCTCCCTCGGT TCCTTCGCACAGTTCCTCGTCGCCGATCAATCCGAACTACATCTGGTGCCGAAAGAATGCGATCTGGTGGCTGCTGCTGCCGTTCCGGTTGCTTTTGGGA CTTCTCATGTTGCTCTTGTTCACAGAGCTGAGCTGGGTTCCGGCCAGGTTCTTCTGGTTATTGGAGCAGCTGGAGGTGTAGGCCTTTCTGCTGTTCAAAT TGGCAAAATCCGTGGAGCCATTGTTATTGCTGTTGCTAGGGGAGATGACAAGATTCGGCTTCTGAAGTCGATGGGAGTTGATCACGTAGTGGACTCGACT AAAGAAAGCGTTATCGCGAGTGTGAAGAGCTTCCTCAAGTCAAAGAAGCTCAAAGGGGTTGATGTTCTGTATGATCCCGTAGGTGGGAAGCTTGCTAAGG AAAGTTTGAAGCTTTTGAATTGGGGTGCACAGATTCTGGTTATTGGGTTCGCCAGTGGCGAGATACCTGTCATTCCTGCCAATATCGCCCTTGTCAAGAA CTGGTCTGTTCATGGACTTTACTGGGGAAGCTACAAGTTCCATAAACCAGCTGTTCTTGAAGATTCTCTCAAGGAGCTGCTCGATTGGATGGCGAGAGGA CTCATCACGATCCACATTTCCCATACTTACAGCCTCTCCGAGGCCAGCCTTGCTTTTGCTGCGATCAAAGATAGGAAAGCGATCGGGAAGGTTATTATTA CCACAGACGACGCAAGCCATTCGCGATCAAAGCTTTGA
AA sequence Show only first row Show all	>Lus10003691 pacid=23179466 polypeptide=Lus10003691 locus=Lus10003691.g ID=Lus10003691.BGIv1.0 annot-version=v1.0 MDALVCERLGDPAADGGDSPIFLKKDHPIPPLESPTSVRVRVKATSLNFANYLQIQGKYQEKYPLPFIPGSDYSGVVDSVGSGVSLFKVGDSVCSFASLG SFAQFLVADQSELHLVPKECDLVAAAAVPVAFGTSHVALVHRAELGSGQVLLVIGAAGGVGLSAVQIGKIRGAIVIAVARGDDKIRLLKSMGVDHVVDST KESVIASVKSFLKSKKLKGVDVLYDPVGGKLAKESLKLLNWGAQILVIGFASGEIPVIPANIALVKNWSVHGLYWGSYKFHKPAVLEDSLKELLDWMARG LITIHISHTYSLSEASLAFAAIKDRKAIGKVIITTDDASHSRSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	0	1
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	1.0	0.9034
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	4.6	0.8578
AT4G33890			unknown protein		Lus10011423 [exp]	5.7	0.8418
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	6.0	0.8921
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	8.5	0.8691
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004176 [exp]	14.1	0.8048
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	19.2	0.8488
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	19.8	0.8381
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10042302 [exp]	22.4	0.8758
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	26.3	0.8731

Compare expression of checked genes

Lus10003691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.