Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001579 [exp] 461 / 2e-164 AT2G40920 67 / 6e-12 F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 49 / 2e-06 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 44 / 9e-05 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038603 [exp] 43 / 0.0002 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10000190 [exp] 42 / 0.0006 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 42 / 0.0006 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 42 / 0.0006 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G093100 [exp] 125 / 2e-33 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.019G062900 [exp] 125 / 2e-33 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003692 pacid=23179459 polypeptide=Lus10003692 locus=Lus10003692.g ID=Lus10003692.BGIv1.0 annot-version=v1.0 ATGGCGGTTACCCAACAAAGCTTCCTTTCACCTCTCCTCCCGTCGAGCTTCGTCGTCAACACTCTCCTCCGCCTCCCGCCGAGATCCCTCTTTCGGTTCA AGTCCGTCTTCAAGTCATGGTACGTCGTGATCTCCTGCCAGAAATTCCGAGACAAGTACTACTCCTTAAGAGCCGCCGGCGTCTGGCGCTTCCTCTTCCA GGCCTCCGACTACGACTACCACCCTCCGTCCTTCACCGGCTTCCACACCTTCGTCACCGTCGACTGCCTTGGAATCCCCCGCGACGTCCTCACCGTCGGC CTCGTCCCCGGCTCGATCAAGCTCGTCCTCCCCAGCTGCCGCGGCGTTTTCTGCTTCCCCGCCGCGAATTCGGCCTATCTCTGTAACTCTGCCGCACATT CCATCTTCCCACTGCCGCCTCCGGTCGACCGGTCCGACCAGAATCCGGTTACAGCGTTCGGATTCGGGTACGTGAAGTCGACGGAGGAGTTCAAGGTGGT GAGACTGCAATACAATGCGCCTTCGAATTCGAATTCGAATTTGAAAAGTTTGCTTAAATGCAGAGTGGAATCCTCTGTTTTCACCTATCCTACAAAGGGA GGAGCTTTAACTAATGCTTGGAGAGCTTTGAAGGAAGAATGTCCTTACTTTGTGGAGGAGTTCGGGTTACCGGTTTTCGTGCAGGGGAACGAGACTGTCT ACTGGAAGATCGACCACAGACAAACCAACGAAGCGGTGGGAAACAAAGACGAGGATTTTCTCGTGGCGTTCAACATCAACGAGGAGAGGTTTGGTGTAGT GCGGAGGCCGGAAGGATGTAAGCCGAGTTCGGGATGCTGGACGAAGCTGATGGAGGCCTAG
AA sequence Show only first row Show all	>Lus10003692 pacid=23179459 polypeptide=Lus10003692 locus=Lus10003692.g ID=Lus10003692.BGIv1.0 annot-version=v1.0 MAVTQQSFLSPLLPSSFVVNTLLRLPPRSLFRFKSVFKSWYVVISCQKFRDKYYSLRAAGVWRFLFQASDYDYHPPSFTGFHTFVTVDCLGIPRDVLTVG LVPGSIKLVLPSCRGVFCFPAANSAYLCNSAAHSIFPLPPPVDRSDQNPVTAFGFGYVKSTEEFKVVRLQYNAPSNSNSNLKSLLKCRVESSVFTYPTKG GALTNAWRALKEECPYFVEEFGLPVFVQGNETVYWKIDHRQTNEAVGNKDEDFLVAFNINEERFGVVRRPEGCKPSSGCWTKLMEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003692 [exp]	0	1
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10011114 [exp]	1.4	0.7919
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	4.5	0.7355
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	5.2	0.7061
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10018623 [exp]	19.0	0.6908
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	21.9	0.7004
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	23.2	0.6255
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	26.5	0.6676
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	27.8	0.7023
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	28.6	0.6618
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	30.9	0.6357

Compare expression of checked genes

Lus10003692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.