Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40810 563 / 0 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 558 / 0 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT3G62770 424 / 2e-147 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT5G05150 347 / 5e-118 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT4G30510 114 / 3e-29 ATATG18B ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) AT5G54730 50 / 1e-06 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT1G03380 49 / 7e-06 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT1G54710 44 / 0.0003 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001580 [exp] 746 / 0 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10041353 [exp] 429 / 4e-149 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 429 / 5e-149 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 387 / 9e-133 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 378 / 3e-129 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 377 / 3e-128 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 369 / 3e-125 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036618 [exp] 53 / 4e-07 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10035835 [exp] 50 / 2e-06 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062800 [exp] 614 / 0 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.002G207865 [exp] 434 / 3e-151 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 425 / 2e-147 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 380 / 6e-131 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 378 / 9e-130 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.018G101200 [exp] 147 / 3e-40 AT4G30510 432 / 2e-152 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) B, homolog of yeast autophagy 18 (ATG18) B (.1), homolog of yeast autophagy 18 (ATG18) B (.2) Potri.013G028200 [exp] 50 / 2e-06 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.011G132700 [exp] 50 / 2e-06 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 50 / 3e-06 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.005G040300 [exp] 49 / 6e-06 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003694 pacid=23179464 polypeptide=Lus10003694 locus=Lus10003694.g ID=Lus10003694.BGIv1.0 annot-version=v1.0 ATGACTTCTACTCTTTCCTCCGCCGCTGCAGCACCCGGCGGTGAATCCGATGACGACTGCATCACGGAGCTGCTCTCCGTTTCCTGGAACCAGGACTACC GCTGCTTCGCCGCCGCCACAAGCTCCGGGTTCCGGATTTACAGCTGCGAGCCTTTCAAGGAGACGTTCAGGAGGGACATAAGGAGCGGAGGTTTCAAGAT CGTAGAAATGCTGTTCCGGAGCAACATCCTGGCGCTGGTGGGAAGCGATTCCAGCTCGCAGTATCCGCCGAACAAGGTTCTGATATGGGACGATCACCAG AGCCGCTGCATTGGCGAGTTTTCGTTTAGGTCTCAGGTCCGTGCTGTGAGGTTGAGCAAGGATCGGATTGTCGTGGTTCTCGAGCACAAGGTTTATGTCT ATGATTTCGCGGATCTGAAGCTTCTTCACCAGATCGAGACTCTGGCGAACCCTAGAGGGCTCTGCTGTCTCTCGCACCATCCGAACACTTCCGTGCTGGC TCTCCCTGGGCTCTACCGTGGGCAGGTTCGAATTGAGCATTTCGGATTGAATCTGGTGAAATTGGTGAATGCTCATGATAATCATATTGCTTGCCTTACC CTCACCATGGATGGCTTGCTCCTCGCTACTGCTAGCACCAAAGGCACCTTGATCAGAATTTTCAACACCTTGGATGGAACTCGCTTGCAAGAGGTGCGAA GAGGAGTGAACGGAGCTGAAATTTATGGCATTGTACTTTCTCCAGATGTGCAATGGCTGGCCGTGTCAAGTGATAAAGGCACTGTTCATATTTTCAGCCT AAGGGTTAGAGTGGCTGGAGAAGACTCACCATCCTCTCACCCAAATGGTCTTCAAAGCCCAGCATTGCTACACCAAAATTCATCAACCTCAGTTACTGCT CTGGTTTCTCCCAGTTCCAGCGCCAACCAGAGTTCATCGTTGTCGTTTATGCGAGGGGTGTTGCCGAAATATTTCAGCTCTGAGTGGTCATTTGCTCAGT TCCGTTTACCAGAAGAGACCCACTTCATTGCTGCATTCGGATCTCGGAACACAGTCATTGTCGTTGGCGTCGATGCAAGTTTCTACAGATGCAGATTCGA TCCAGTTAACGGAGGAGAGATGGTGCAGCAGGAATACGTCCGCTTCCTGAAAGCCGATAGCCGCCCTAGATAA
AA sequence Show only first row Show all	>Lus10003694 pacid=23179464 polypeptide=Lus10003694 locus=Lus10003694.g ID=Lus10003694.BGIv1.0 annot-version=v1.0 MTSTLSSAAAAPGGESDDDCITELLSVSWNQDYRCFAAATSSGFRIYSCEPFKETFRRDIRSGGFKIVEMLFRSNILALVGSDSSSQYPPNKVLIWDDHQ SRCIGEFSFRSQVRAVRLSKDRIVVVLEHKVYVYDFADLKLLHQIETLANPRGLCCLSHHPNTSVLALPGLYRGQVRIEHFGLNLVKLVNAHDNHIACLT LTMDGLLLATASTKGTLIRIFNTLDGTRLQEVRRGVNGAEIYGIVLSPDVQWLAVSSDKGTVHIFSLRVRVAGEDSPSSHPNGLQSPALLHQNSSTSVTA LVSPSSSANQSSSLSFMRGVLPKYFSSEWSFAQFRLPEETHFIAAFGSRNTVIVVGVDASFYRCRFDPVNGGEMVQQEYVRFLKADSRPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Lus10003694 [exp]	0	1
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Lus10001580 [exp]	1.0	0.8994
AT2G34585			unknown protein		Lus10023307 [exp]	7.1	0.7793
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	7.5	0.8085
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	8.0	0.7898
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	16.2	0.7851
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10008872 [exp]	16.8	0.7058
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	18.0	0.7909
AT2G15860			unknown protein		Lus10021000 [exp]	18.0	0.7632
AT5G59830			unknown protein		Lus10040857 [exp]	19.6	0.7231
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10035948 [exp]	20.8	0.7412

Compare expression of checked genes

Lus10003694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.