Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03100 51 / 1e-07 F-box/RNI-like superfamily protein (.1) AT1G67390 51 / 2e-07 F-box family protein (.1) AT2G39415 49 / 2e-07 F-box family protein (.1) AT3G51530 50 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G53840 50 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02920 50 / 3e-07 F-box/RNI-like superfamily protein (.1) AT1G51370 49 / 8e-07 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT1G69630 49 / 1e-06 F-box/RNI-like superfamily protein (.1) AT5G02930 49 / 1e-06 F-box/RNI-like superfamily protein (.1) AT3G59200 49 / 1e-06 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029003 [exp] 273 / 2e-88 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10037289 [exp] 198 / 1e-60 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10037261 [exp] 159 / 7e-49 AT5G02920 65 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10029083 [exp] 159 / 1e-45 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10036905 [exp] 134 / 1e-39 AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10034290 [exp] 138 / 1e-38 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10028939 [exp] 104 / 4e-26 AT3G29170 80 / 3e-18 Eukaryotic protein of unknown function (DUF872) (.1) Lus10011549 [exp] 83 / 4e-18 AT5G67620 90 / 1e-20 unknown protein Lus10039271 [exp] 77 / 3e-16 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024200 [exp] 58 / 1e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.013G146800 [exp] 56 / 4e-09 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 56 / 7e-09 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G121500 [exp] 51 / 2e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.017G146500 [exp] 50 / 3e-07 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.011G024600 [exp] 50 / 5e-07 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 50 / 5e-07 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.014G163866 [exp] 48 / 1e-06 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.001G337200 [exp] 48 / 2e-06 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104300 [exp] 47 / 3e-06 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003696 pacid=23179460 polypeptide=Lus10003696 locus=Lus10003696.g ID=Lus10003696.BGIv1.0 annot-version=v1.0 ATGAAGAACAAGAAGGCAAAATCACCGGCCGTCGATCGAATTTCAGAGCTACCGGAAGAAATCATCCACCACATCCTTAGAAGCTTCCATTTCCACAAGG ACGCGGCGAGAACAAGCATCTTGTCCAGAAGATGGCTCCACTTATGGCGCACTTACCCTGTCGTCGAGTTTCAGGATCACGGTAGCAAGAAGTTCAATAG CTTCGCGGCCGATACTTCGAAGAGGCTGCTAGCGGTGCCGGGATTGCTTTTGGACTCATTCGACATCACACTGGCTCGCCCTTCCTATTCGAAGGATGAT CGGACGGTAGAGAAGTGGATGATGCCATACGGGGAACTTTTGCTATCATCCATCTGCACCAGATCTCCGCTTAATGTCGTGGTTAAAAACTATCTCTCCG GTTCCGGTGATGGTCATCATGATTCCCTCGATTGTTTTATAAGTCGATTGTTCTCGAATGGCGGCCGCACCAAATCCCTCGACCTGCGAGGTTTCGGCCT AACCCGATTGCACAATTTCAATACTTGTCTCGACAATCTTCAGGAACTCTGTCTGGAAAACATCCGGGTTAGCCAACAGAGCTTCCCGAGCTGTCTGGCT AATGCTCCTCGTCTCGAGAAATTGAGTTTGAGATTTATTCGCGGAATTCACCCTGGATATCTCTGCTTCTAA
AA sequence Show only first row Show all	>Lus10003696 pacid=23179460 polypeptide=Lus10003696 locus=Lus10003696.g ID=Lus10003696.BGIv1.0 annot-version=v1.0 MKNKKAKSPAVDRISELPEEIIHHILRSFHFHKDAARTSILSRRWLHLWRTYPVVEFQDHGSKKFNSFAADTSKRLLAVPGLLLDSFDITLARPSYSKDD RTVEKWMMPYGELLLSSICTRSPLNVVVKNYLSGSGDGHHDSLDCFISRLFSNGGRTKSLDLRGFGLTRLHNFNTCLDNLQELCLENIRVSQQSFPSCLA NAPRLEKLSLRFIRGIHPGYLCF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51530			F-box/RNI-like/FBD-like domain...		Lus10003696 [exp]	0	1
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10036660 [exp]	2.0	0.7590
AT5G22210			unknown protein		Lus10043407 [exp]	2.6	0.7784
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	3.9	0.7404
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010330 [exp]	4.2	0.6733
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	5.9	0.7041
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	17.4	0.6831
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	23.5	0.6844
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	23.6	0.6544
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	24.5	0.6544
					Lus10008001 [exp]	25.4	0.6544

Compare expression of checked genes

Lus10003696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.