Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40830 252 / 1e-82 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 220 / 3e-70 RING/U-box superfamily protein (.1.2.3) AT3G10815 129 / 3e-36 RING/U-box superfamily protein (.1) AT3G19950 124 / 4e-33 RING/U-box superfamily protein (.1) AT1G60360 107 / 7e-27 RING/U-box superfamily protein (.1) AT2G39720 102 / 1e-24 RHC2A RING-H2 finger C2A (.1) AT3G46620 100 / 6e-24 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G59550 96 / 2e-22 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G68180 92 / 9e-22 RING/U-box superfamily protein (.1) AT3G13430 92 / 2e-21 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013235 [exp] 299 / 2e-101 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 298 / 6e-101 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10001582 [exp] 257 / 1e-86 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10001583 [exp] 118 / 1e-33 AT3G56580 69 / 1e-15 RING/U-box superfamily protein (.1.2.3) Lus10024372 [exp] 122 / 3e-32 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10010179 [exp] 116 / 8e-31 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10022967 [exp] 113 / 2e-29 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10028063 [exp] 114 / 5e-29 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10025612 [exp] 113 / 6e-29 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032100 [exp] 309 / 2e-105 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.016G029300 [exp] 285 / 1e-95 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.015G028400 [exp] 125 / 2e-33 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.006G087800 [exp] 124 / 4e-33 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G085800 [exp] 124 / 4e-33 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 122 / 3e-32 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 120 / 9e-32 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.007G074014 [exp] 119 / 2e-31 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.015G127600 [exp] 119 / 4e-31 AT1G68180 158 / 1e-46 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 117 / 2e-30 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10003698 pacid=23179473 polypeptide=Lus10003698 locus=Lus10003698.g ID=Lus10003698.BGIv1.0 annot-version=v1.0 ATGTCAAGCGGCAGAGATACCCACTGGTGCTATAGATGCAGGAGAACGGTTCATTTGAGAGGGAGATCAGAAGCAGTTTGCCCATACTGCAGTGGCGGAT TCGTCCAAGAACTCGATGAAATCAGCCGAGCCGATTCTGCAGGCGACTCTGGAGGACTTGGCAGTGAATATTACGGCCATGACCACGTGTTCGGACTAAT GGAAGCCTTTTCGGCCCTAATGAGGCAAAGAAATAGTCATGGAAGGAGGACTAGATCGGTTCCAGTTCCGGACTACGGTCCTGAATTTGGTCCACTGTTG ATGTTCGGCAGCCAAATCCCCTTCCGGATCGAAACTAGCCGGTTCGACACTCATGGACCCGGAATCGGGTCCATGAGGAGTAGTACACTGCTGGAAGAAC TGTTTGAGCGCCTCTTTGCAAGTAACAGACGTGGACCTGCACCTGCATCCAGATCAGCCATCGATGCAATGCCTACGATCAAGATTACTCGTAGGCACCT CCGGACCGATTCGCACTGTCCAGTATGCAAGGACGAATTCGAACTGGGATCGGAAGCGAGACAGATGCCGTGCAACCATATATACCATGCGGACTGCATT GTTCCCTGGCTGGTACAGCATAACTCGTGCCCCGTGTGTCGCCAGGAGCTCTTCTCGTCCTTACCAGGCTCAAGCTCGAGATCAAGTAACAGTAGTAGTA GCAGCAACTCATATGTGAGGGAAGACAGTGGCAGAGAAAGCTGGAGGAATCCTTTCTCTTCGATGTGGCAATTCGATTCGAGTTCCAACTACGATGGTCC TGCCACGGGAAGCAGCCCGACAACGACTATGAATAGTGAACAGAGTGATCATCATCACCAGATGGGGTATTCAGGGTGGCCTTTTGATTAG
AA sequence Show only first row Show all	>Lus10003698 pacid=23179473 polypeptide=Lus10003698 locus=Lus10003698.g ID=Lus10003698.BGIv1.0 annot-version=v1.0 MSSGRDTHWCYRCRRTVHLRGRSEAVCPYCSGGFVQELDEISRADSAGDSGGLGSEYYGHDHVFGLMEAFSALMRQRNSHGRRTRSVPVPDYGPEFGPLL MFGSQIPFRIETSRFDTHGPGIGSMRSSTLLEELFERLFASNRRGPAPASRSAIDAMPTIKITRRHLRTDSHCPVCKDEFELGSEARQMPCNHIYHADCI VPWLVQHNSCPVCRQELFSSLPGSSSRSSNSSSSSNSYVREDSGRESWRNPFSSMWQFDSSSNYDGPATGSSPTTTMNSEQSDHHHQMGYSGWPFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	0	1
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	3.9	0.8764
					Lus10001956 [exp]	3.9	0.8443
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	4.4	0.8888
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	6.3	0.8780
AT5G38250			Protein kinase family protein ...		Lus10038814 [exp]	6.6	0.8115
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10026199 [exp]	7.1	0.8634
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	8.5	0.8514
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	8.9	0.8558
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	9.4	0.8646
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	11.2	0.8611

Compare expression of checked genes

Lus10003698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.