Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14820 315 / 3e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G01630 159 / 4e-48 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G08690 76 / 6e-16 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 74 / 6e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G63060 70 / 4e-14 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75170 70 / 6e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT2G21520 67 / 2e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 67 / 2e-12 ATSFH12 SEC14-like 12 (.1) AT5G47730 66 / 2e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G55840 65 / 4e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001584 [exp] 471 / 6e-171 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 329 / 2e-115 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10021817 [exp] 202 / 2e-65 AT1G14820 164 / 3e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10004684 [exp] 166 / 2e-50 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 160 / 2e-48 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 158 / 1e-47 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 157 / 3e-47 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10032587 [exp] 73 / 7e-15 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 72 / 3e-14 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135600 [exp] 372 / 7e-132 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 361 / 9e-128 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 293 / 1e-100 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G068000 [exp] 174 / 5e-54 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 171 / 7e-53 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 163 / 2e-49 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G105100 [exp] 123 / 8e-36 AT1G14820 113 / 3e-32 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 75 / 1e-15 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G032600 [exp] 73 / 9e-15 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G261000 [exp] 72 / 9e-15 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10003699 pacid=23179462 polypeptide=Lus10003699 locus=Lus10003699.g ID=Lus10003699.BGIv1.0 annot-version=v1.0 ATGGAGAATCCAAGCGAAATGGCACTTACCCAGATGAGGAAATCGGTTGAAAAGTTCGGTTTTACTACGGAGAAATATGGAGATCCGACGTTGATGAGGT TTCTGATCGCGAGGGCGATGGAAGCCGACAAGGCTGCGAAGATGTTTGTGGAGTGGCGGAAGTGGAGGGACTCGTTTGTTCCCGATGGGTTCATCTCGGA TTCTGAAGTCTCCGATGAACTGGTGATGGAGAAGGTTTTCTTGCAGGGGTTGACGACGGGTGGGTATCCCCTGGTGATCGTTAAAGCTAGCAAGCATTAC CCTTCCAAGGATCAGCTTCAGTTCAAGAAGTTCATTGTTCATCTGCTGGACAAAACCATTGCCAGCTCATTCAAGGGAAAAGAAGTCGGAAACGAGAAGC TGGTAGCCATGTTGGACATGCAGCAACTTGCATACAAGAACGTCGATGCTCGTGGCCTCATCACCGGCTTTCAGTTCTTGCAGGCCTACTACCCGGAGCG GCTGCACAAGGTGTACATACTAAACATGCCGTGGTTCTTCGTGAACGTGTGGAAGGTAATATCACGCTTCCTCGAGAAAGCGACACTGGAGAAGGTAATG ATTGTGACTGACGAGGAGGAAAGAAGAGAGTTGGTGGCCGAAGTAGGGGAAGCGACATTGCCCGACGAGTATGGAGGCCGAGCGAAGCTCGTGCCCGTTC AGGATGTCACGTGTCCTCCATTGGAGGTCTGA
AA sequence Show only first row Show all	>Lus10003699 pacid=23179462 polypeptide=Lus10003699 locus=Lus10003699.g ID=Lus10003699.BGIv1.0 annot-version=v1.0 MENPSEMALTQMRKSVEKFGFTTEKYGDPTLMRFLIARAMEADKAAKMFVEWRKWRDSFVPDGFISDSEVSDELVMEKVFLQGLTTGGYPLVIVKASKHY PSKDQLQFKKFIVHLLDKTIASSFKGKEVGNEKLVAMLDMQQLAYKNVDARGLITGFQFLQAYYPERLHKVYILNMPWFFVNVWKVISRFLEKATLEKVM IVTDEEERRELVAEVGEATLPDEYGGRAKLVPVQDVTCPPLEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	0	1
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	1.0	0.8969
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	2.4	0.8684
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	4.0	0.8942
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	5.7	0.8485
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10032795 [exp]	5.8	0.8169
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	6.3	0.8469
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Lus10038046 [exp]	7.1	0.8300
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	11.2	0.8543
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	12.4	0.8521
					Lus10040104 [exp]	12.8	0.8170

Compare expression of checked genes

Lus10003699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.