Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14850 779 / 0 NUP155 nucleoporin 155 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001585 [exp] 1046 / 0 AT1G14850 779 / 0.0 nucleoporin 155 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134800 [exp] 823 / 0 AT1G14850 2053 / 0.0 nucleoporin 155 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08801 [flax] [poplar] Nucleoporin_N Nup133 N terminal like
Representative CDS sequence Show only first row Show all	>Lus10003700 pacid=23179478 polypeptide=Lus10003700 locus=Lus10003700.g ID=Lus10003700.BGIv1.0 annot-version=v1.0 ATGTCGGGGGACGAGGAGCTTGTGATCAGAGACGTCAAGAATGCTGGCTTGGTGGTCAGCGATCGCATTGGGCGGGAGCTCTCTTCTCAGCTCGACCTCG AAGAAGCCCTAGAAGCTTCTCGATACGCCAGCCATCCTTACTCCACGCATCCTAGAGAATGGCCTCCTTTGGTTGAGGTGGCAAATACATGGGATCTGCC TTCTGCACTGATCGATAGGTACAATTCGACTGGTCGAGAAGGGACTGCTTTCTGTGGGATATTTCCAGAGATACGGCGTGCATGGGCGTCACTCGATAAT TCCTTGTTTCTATGGCGTTTTGATAAGTGGGATGGTCACTGCTCCGAATACAACACCGAAGAGCAAGTCATTTGTGCCGTTGGCCTTGCTAAAGCCAAAC CTGGTGTTTTTGTCGAAGCAATCCAGTACCTCTTAGTCCTAGCAACTCCTGCTGAGTTGATCCTTGTAGGAGTTTGCTGCTCTAGTGGGGCAGACGGTCA TGATCCCTATGCAGAGGTTTCACTGCAACCTTTGCCAGACTATTCAGTACCATCTGATGGGGTCACCATGACTTGTATCGTTTCAACTGAAAATGGCCGT ATCTTCTTTGGTGGGCGTGAAGGGCATATTTATGAGTTGCAGTACAGCACTGGCTCTGGGTGGCATAAGAGATGTCGAAAAGTTTGCCTTACTGCTGGAG TTGGTAGTGTGATTTCTAGGTGGGTTTTGCCAAACGTATTTAAGTTTGGAGCTGTTGACCCCATTGTTGAGCTGATTTTCGACAATGAAAGGCATATTTT ATATGCCCGAACTGAAGATATGAAGCTTCAAGTTTTCTCCGTGGAACCGAGTATAGATGGGTCTGTGAAGAAGGTAGCAGAAGAAAGGAATTTGTTCAAT GGAAGTAGGCAATCAACAGGATCAAGGACCCCGAGCGGAACGGGAAAGTCAGCAGTTGTTTGCATTTCGCCATTATCCTCATTGGAGTCCAAGTCTGTGC ACTTGGTTGCTATTCTATCCGACGGCAGAAGGATGTTTCTTTCCACCTCTTCATCAACCAGTGGGAATGTCGAAAGTTGGAAGCCACAGTGTTTGAAAGT CGTGGCAACTCGGCCTTCTCCTCCTCTAGGGGTAAGTGGAGGACTCACGTTTGGAGCTGTATCCCTCGCGAACAGAACCCCGAACGAGGATCTCTCGTTA AAGGTCGAAGCAGGATTCTATTCTACCGGAACTCTTGTCCTCTCTGACTCATCACCAGCCACCATGACTTCTCTTGTAGTTGTGAGCAAAGACTCGAGTT CTCATTCTTCTGGATCTGGTAGTTTGGGCATCACAGCAAGGAGTTCTCGTGCACTTAAGGAACTCGTCTCTTCCATACCCGTTGAAGGCCGGATGCTCTT TGTAGCAGACGTTCTACCTTCTCCAGATACAGCTTCAACAGTGCAGTCTCTATATGGTGAACCTGAGATTTTTGGGTTTAATAAGACAGGAGAGTCCTGT GAAAAGGCATCTGCCAAGCTATGGGCTAGAGGTGATCTCTCCGCCCAGCATATACTGCCAAGGAGGAGAATCGTTCTGTTCAGCACTATGGGAATGATGG AAGTTGCGTTCAACCGACCGGTGGATATTCTAAGGAAGTTGCTCGAATCCAATTTGTCCAGGGCCATGTTAGAAGATTTCTTCACTCGGTTTGGTGCTCC GGAGGCAGCTGCAATGTGCCTAATGCTTGGGGCAGGTTGTTCAGGAAGCCGAGCCGGTATTTTCAGGAGCTCATGA
AA sequence Show only first row Show all	>Lus10003700 pacid=23179478 polypeptide=Lus10003700 locus=Lus10003700.g ID=Lus10003700.BGIv1.0 annot-version=v1.0 MSGDEELVIRDVKNAGLVVSDRIGRELSSQLDLEEALEASRYASHPYSTHPREWPPLVEVANTWDLPSALIDRYNSTGREGTAFCGIFPEIRRAWASLDN SLFLWRFDKWDGHCSEYNTEEQVICAVGLAKAKPGVFVEAIQYLLVLATPAELILVGVCCSSGADGHDPYAEVSLQPLPDYSVPSDGVTMTCIVSTENGR IFFGGREGHIYELQYSTGSGWHKRCRKVCLTAGVGSVISRWVLPNVFKFGAVDPIVELIFDNERHILYARTEDMKLQVFSVEPSIDGSVKKVAEERNLFN GSRQSTGSRTPSGTGKSAVVCISPLSSLESKSVHLVAILSDGRRMFLSTSSSTSGNVESWKPQCLKVVATRPSPPLGVSGGLTFGAVSLANRTPNEDLSL KVEAGFYSTGTLVLSDSSPATMTSLVVVSKDSSSHSSGSGSLGITARSSRALKELVSSIPVEGRMLFVADVLPSPDTASTVQSLYGEPEIFGFNKTGESC EKASAKLWARGDLSAQHILPRRRIVLFSTMGMMEVAFNRPVDILRKLLESNLSRAMLEDFFTRFGAPEAAAMCLMLGAGCSGSRAGIFRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	0	1
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	1.0	0.9912
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	1.4	0.9674
AT3G14120			unknown protein		Lus10037684 [exp]	2.4	0.9605
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	3.2	0.9662
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	3.5	0.9674
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	4.0	0.9663
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	4.6	0.9599
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015202 [exp]	4.9	0.9513
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	6.3	0.9589
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	7.2	0.9507

Compare expression of checked genes

Lus10003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.