Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14850 890 / 0 NUP155 nucleoporin 155 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001586 [exp] 1281 / 0 AT1G14850 985 / 0.0 nucleoporin 155 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134800 [exp] 1013 / 0 AT1G14850 2053 / 0.0 nucleoporin 155 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03177 [flax] [poplar] Nucleoporin_C Non-repetitive/WGA-negative nucleoporin C-terminal
Representative CDS sequence Show only first row Show all	>Lus10003701 pacid=23179458 polypeptide=Lus10003701 locus=Lus10003701.g ID=Lus10003701.BGIv1.0 annot-version=v1.0 ATGGGGGACCCGATTGGCTCGATATTGTATGGTTCGGATTTAGATGCCGGTGACAGGAATTTTGTGAGAAACTTATTCGGTACCTACACTCAAAATGCTG ATGGCAGTCCGGCAAATAAAAGGCAGCGCTTACCATATAGTCATGTTGAACTAGCAGCAATGGAGGTTAGGGCGATGGAGTGCGTTAGACAATTGCTTCT TCGATCTGGCGAAGCTCTCTTTTTGTTACAGCTTCTTTCTCAGCATCATGTAACACGCTTAGTTCAAGGGTTTGATGCTTCCCAAAGGCAGACATTGATT CATTTGACATTCCATCAGCTAGTTTGTTCCGAAGAGGGTGACCGGATCGCCACTGTGCTAATAGCTGCATTGATGGAGTATTATACAGGTCCTGATGGCA GGGGAACAGTTGATGATATTAGCGGTAGATTGCGTGACGGTTGTCCGAGCTATTTCAAGGAGTCTGATCGTAAGTTCTTCTTGGCCGTTGAATGTCTTGG AAGAGCTGCTGTAACGTCTAATCCTGTTGAGAAGGAGAATCTTGCCAGAGAGGCATTTAGTTCTCTTAGTAAAGTTCCAGAATCTGCTGACTTGATAACT GTATGCAAAAGATTTGAGGATTTGAGATTTTATGAAGCGGTTGTGCGGTTGCCTCTGCAGAAGGCTCAAGCTCTCGACCCTGCGGGAGATGCTTTCAATG ACCAAATCGATACGGCAATGAAGGAATATGCACTTGCTCAACGTGTGCAGTGCTATGAGATAGTTGCTAGTGCTTTGCGTTCCCTGAAAGCTGCAGGTGT TCTTGATCAGGCATCACGGAAGAAATACATCAGCCAAATCGTTCAGCTTGGTGTTCAGTCATCTGACAAATTATTCCATGAGCACCTGTACATGACTATG ATCGATTTGGGCCTTGAAGATGAGCTGCTGGAATATGGTGGTGCCGACTTAGTTCCTTTCCTGCAAAGTGGTGGCAGGGGATCCTTGCAAGAGGTGCAAG CTCCTTCTGTGGGGAATTCTTCTCCTATCAGCCATTCAGGAACAACAATCCCTTCTAACCAAGTGAAGTACTTTGATCTTCTGGCACGCTATTACGTCTT GAAGAGACAGCATGTACTGGCTGCTCATGTGCTGCTTAGACTGTCCGAAAGACGCTCTAATGATGCCGGGGGTGCACCTACTTTAGAACAGAGGCATCAA TATCTGAGTAACGCAGTTCTACAGGCAAAGAGTGCAAGTGATGGCGGCTCGGGCAGGGGTGCTCTTGATAGTGGATTGTTAGATTTGCTTGATGCGAAGC TTAAAGTACTACGTTTCCAAATAAAAATAAAAGACGAACTTGAGTCTATAGCTTCTGCAACTGAAACCTCGTCTCCCATGATCGAGGAGGAACAAGATGG ATCTGCCCCTGATGACTGCAACAACAACAACAACATGGAGTTGGCAAACGTGGCACTTGAAAAGGCTAAAGAGCTATCCTTGGAGTTGAAGAGTATAACT GAGCTATACAATGACTATGCAGTTCCTTTCGAACTTTGGGAGATATGCCTTGAAATGCTCTACTTCGCAAATTATGCTGTGGATGCCGATAGCAGTATAG TAAGAGATACTTGGGCTAGACTCGTTGATCAAGCTCTTTCAAGAGGTGGAGTTGCTGAAGCCTGTTCGGTTTTGAAGAGTGTCGGCTCAAACATATATCC CGGAGATGATGCCATTCTGCCCCTAGAAACACTTTGCCTTCACCTTGAGAAGGCAGCACTGGAGAGAGCGGAATCTGGCGTTGAAATTGTTGGCGATGAA GATGTGCCGAGAGGTCTTATAGCTGCCTGCAAAGGCGCGACCGAACCTGTATTGAATGCCTACGACCAACTATTATCAAATGGAGCTATTCTGCCGTCCC CCAACCTTAGGTTGCGGCTTCTTCAATCCGTCCTTGTGGTGCTGCGTGAATGTGCCATGTCCGCATTTGCTGAGAGGATGGGTACTAGCTCGACAGGAGC TTCCTTAATATTGGGCGGAACATTCTCATTGGAGCAAACAGCTGTCTTTAACCAGGGGATGCGCGATAAGATCTCGTGCGCAGCAAACAGGTACATGACC GAAGTGAAACGGCTGCCACTTCCACAGAGCAAGACGGATGCAGTTTACAGAGGATTCAGGGAGCTGGAGAACTCCCTCATTAGTCCCTTCTCTTTCGATC GCTACTGA
AA sequence Show only first row Show all	>Lus10003701 pacid=23179458 polypeptide=Lus10003701 locus=Lus10003701.g ID=Lus10003701.BGIv1.0 annot-version=v1.0 MGDPIGSILYGSDLDAGDRNFVRNLFGTYTQNADGSPANKRQRLPYSHVELAAMEVRAMECVRQLLLRSGEALFLLQLLSQHHVTRLVQGFDASQRQTLI HLTFHQLVCSEEGDRIATVLIAALMEYYTGPDGRGTVDDISGRLRDGCPSYFKESDRKFFLAVECLGRAAVTSNPVEKENLAREAFSSLSKVPESADLIT VCKRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDTAMKEYALAQRVQCYEIVASALRSLKAAGVLDQASRKKYISQIVQLGVQSSDKLFHEHLYMTM IDLGLEDELLEYGGADLVPFLQSGGRGSLQEVQAPSVGNSSPISHSGTTIPSNQVKYFDLLARYYVLKRQHVLAAHVLLRLSERRSNDAGGAPTLEQRHQ YLSNAVLQAKSASDGGSGRGALDSGLLDLLDAKLKVLRFQIKIKDELESIASATETSSPMIEEEQDGSAPDDCNNNNNMELANVALEKAKELSLELKSIT ELYNDYAVPFELWEICLEMLYFANYAVDADSSIVRDTWARLVDQALSRGGVAEACSVLKSVGSNIYPGDDAILPLETLCLHLEKAALERAESGVEIVGDE DVPRGLIAACKGATEPVLNAYDQLLSNGAILPSPNLRLRLLQSVLVVLRECAMSAFAERMGTSSTGASLILGGTFSLEQTAVFNQGMRDKISCAANRYMT EVKRLPLPQSKTDAVYRGFRELENSLISPFSFDRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	0	1
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	1.4	0.9555
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	2.2	0.9397
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	3.0	0.9447
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10025693 [exp]	4.6	0.9167
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	5.5	0.9467
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	7.7	0.9356
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	8.2	0.9197
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	8.5	0.9402
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	9.2	0.9346
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	10.5	0.9164

Compare expression of checked genes

Lus10003701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.