Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01690 1020 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001587 [exp] 1332 / 0 AT2G01690 1096 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034578 [exp] 1160 / 0 AT2G01690 1164 / 0.0 ARM repeat superfamily protein (.1.2) Lus10021813 [exp] 1110 / 0 AT2G01690 1112 / 0.0 ARM repeat superfamily protein (.1.2) Lus10003679 [exp] 730 / 0 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134600 [exp] 1072 / 0 AT2G01690 1070 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G106700 [exp] 1060 / 0 AT2G01690 1076 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11916 [flax] [poplar] Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p binding CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10003702 pacid=23179468 polypeptide=Lus10003702 locus=Lus10003702.g ID=Lus10003702.BGIv1.0 annot-version=v1.0 ATGGCCGACGCTCTGTCCTTGATTTCGGCCAACGTTCTACGAAGTTTGTCCGATAAGCTTTACGAGAAGCGGAAGAATGCTGCCCTGGAGGTTGAAGGGA TAGTGAAGCAGCTGACTGCAGCTGGGGATCATGATAAGATATCGGCAGTGATTGATTTGTTGAAGAATGAGTACACCTACTCTCCGCAAGCCAATCACAG GAAGGTCGATTCGATTGCTCGAGTTCCTGAAGCTCTTTGTCTCAGTTCAGGAGGGTTGATAGGTTTGGCTGCTGCTACAGTAGGGTTGACAACAGAAGCC TCGCAGCATCTCGAGCAAATTGTTCCACCGGTGCTTCATTCATTCTCGGACCAAGATAGTAGGGTTCGCTATTACGCTTGTGAAGCTCTATATAACATTG CAAAGGTTGTGAGGGGGGATTTCATAGTGTTCTTTAATCAAATATTCGATGCTCTCTGCAAGCTTTCTGCAGATTCAGATGCCAATGTACAAAGTGCTGC ACATCTGTTAGACCGCCTTGTGAAAGACATTGTCACGGAGAGTGATCAGTTCAGCATTGAAGAATTTATTCCTCTGCTGAGGGAACGTATGAACGTGCTG AATCCATACGTACGCCAATTCTTGGTAGGATGGATTACAGTTTTGGACAGTGTTCCAGACATAGACATGCTTGGTTTTCTTCCGGATTTTCTCGACGGTT TGTTCAATATGCTGAGCGACTCTAGCCATGAAATACGGCAACAAGCAGATTCCGCACTTTCAGAGTTTCTCCAAGAGATCAAGAATTCCCCATCTGTAGA TTATGGTCGCATGGCCGAGATATTGGTGCAGAGGGCAGCTGCTTCTGACGAATTTACTCGGTTGACAGCTATCACATGGATAAACGAATTCGTTAAACTT GGCGGGGACCAACTCGTGCCGTACTATGCTGATATTCTTGGAGCAATTTTGCCTTGCATATCAGACAAAGAAGAGAAGATTAGAGTGGTTGCTCGTGAAA CGAATGAAGAGCTTCGGGCAATACAAACTGACCCCGCAGAAGGGTTTGATGTTGGTGCGATCCTCTCAATTGCAAGAAGACAACTATCTAGCGAGTCTGA GGCTACACAAATCGAGTCATTGCACTGGATTTCTGCTCTTTTGAACAGACATCGGGCTGATGTCTTGAACTTTCTTGACGACATATTTGACTGTCTTTTG AAAGCCCTATCAGATCCTTCTGATCAGGTAGTCCTGCTTGTTCTCGAGGTTCATGCATGCATTGCCAAGGAGCCACAACATTTCCGCCAGCTAGTTGTCT TCTTGATGCACAGTTTCCGCGTCGATACTTCTCTTCTGGAGAAGCGTGGCGCGTTGATCATTCGACGTCTTTGTATGCTTCTGGATGCTGAAAGGGTGTA TAGGGAACTGTCCAAAATACTCGAGGGGGAAGCCGACCTGGATTTTGCTTCTACGATGGTTCAGGCTCTGAATTTGATTTTGCTTACGTCCTCTGAATTA GCCGAGCTTCGAGAGCTGTTGAAACAGTCACTGACGAATGCTGCCGGGAGAGATTTGTTCCAATCGTTGTGTCACTCGTCTAGACGATGCTTGATTGCTC TTGATTTTCGTGCGATCGTACAGATGTACCAACATGCCAGTGTGGTGATACAGTCTCTACTAGAGGATGATATCAATGTGAAGTTCTTGGTGCAACTGGA CAAACTGATTCGTTTGCTTGAGACGCCGATTTTTGCTTACCTAAGGCTGCAGCTCCTTGAGCCTGGAAGATACACATGGTTGTTAAAAGCCTTGTACGGT CTCCTCATGTTGCTTCCTCAGCAAAGTGCTGCTTTTAAGATCCTAAGGACTCGATTGAAGACGGTACCTTCGTATTCCTTCAGTGGTGGGGATCAGATCA AGCGGACTTCTTCAGGCAATCCGAATTCTCGAAGTAACGGATCACTAGTCTCTGAGGACGGTGATGTAGCAGTGCATCAGGAGGTGGGAATTTCTAATTC TCAGAACGGAATTAACTTCACCTCGAACTTGCTGCAGTTTGAGCAAGTTCAACGCCAACATCGTGTCCACACGAGAAAGCGTGCACATTCTCGAAACACT TCTACTTCCACTTCATCCGTGAAGGCGAGTTCCAGTCTCTGCATCGTGGTGGTTCAACGGCCAGAAGAAAAAGAAGCGCAACGACCAACATCTTCTTCTT CTCTGTCGACGGTAGAAGTAAATAGAATGCTCTCAAGAACAAGGAAAGGGCCAGGGCAGTTGCAGCTATAA
AA sequence Show only first row Show all	>Lus10003702 pacid=23179468 polypeptide=Lus10003702 locus=Lus10003702.g ID=Lus10003702.BGIv1.0 annot-version=v1.0 MADALSLISANVLRSLSDKLYEKRKNAALEVEGIVKQLTAAGDHDKISAVIDLLKNEYTYSPQANHRKVDSIARVPEALCLSSGGLIGLAAATVGLTTEA SQHLEQIVPPVLHSFSDQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAAASDEFTRLTAITWINEFVKL GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIQTDPAEGFDVGAILSIARRQLSSESEATQIESLHWISALLNRHRADVLNFLDDIFDCLL KALSDPSDQVVLLVLEVHACIAKEPQHFRQLVVFLMHSFRVDTSLLEKRGALIIRRLCMLLDAERVYRELSKILEGEADLDFASTMVQALNLILLTSSEL AELRELLKQSLTNAAGRDLFQSLCHSSRRCLIALDFRAIVQMYQHASVVIQSLLEDDINVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYG LLMLLPQQSAAFKILRTRLKTVPSYSFSGGDQIKRTSSGNPNSRSNGSLVSEDGDVAVHQEVGISNSQNGINFTSNLLQFEQVQRQHRVHTRKRAHSRNT STSTSSVKASSSLCIVVVQRPEEKEAQRPTSSSSLSTVEVNRMLSRTRKGPGQLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01690			ARM repeat superfamily protein...		Lus10003702 [exp]	0	1
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10007311 [exp]	4.2	0.8766
AT2G01690			ARM repeat superfamily protein...		Lus10001587 [exp]	4.9	0.8539
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	7.3	0.8876
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	9.2	0.8990
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10031431 [exp]	12.7	0.8478
AT5G20660			Zn-dependent exopeptidases sup...		Lus10009230 [exp]	15.2	0.8665
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	18.3	0.8686
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	26.2	0.8510
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	26.2	0.8614
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	29.0	0.8408

Compare expression of checked genes

Lus10003702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.