Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77360 317 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 179 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62540 124 / 8e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 124 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 124 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 124 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 122 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 120 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 118 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 115 / 8e-30 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001588 [exp] 378 / 4e-129 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 156 / 2e-44 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033591 [exp] 121 / 3e-33 AT1G77360 121 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 125 / 4e-33 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017633 [exp] 123 / 1e-32 AT1G77360 183 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 122 / 9e-32 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 119 / 3e-31 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 116 / 1e-29 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028520 [exp] 112 / 3e-28 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181900 [exp] 338 / 2e-115 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 171 / 4e-50 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 129 / 1e-34 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 128 / 3e-34 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 126 / 3e-33 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G045800 [exp] 124 / 6e-33 AT1G77360 192 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 125 / 8e-33 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G126600 [exp] 120 / 1e-31 AT1G77360 173 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G053600 [exp] 113 / 1e-28 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G084000 [exp] 110 / 8e-28 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003703 pacid=23179467 polypeptide=Lus10003703 locus=Lus10003703.g ID=Lus10003703.BGIv1.0 annot-version=v1.0 ATGAGGATTCACAGTCAGTTTAGTAAGCTATATTCCTCAAGGCGAGCGTTCTTCATAAGAGGTTATAGTATTAGTACGATTCCTTCAGTATACGAACAAT CGGATTCAGTCAAAACGATAAGCAAAATAATGATGTCGACCCCAGCTGTAACTCTCGACACAGCCCTAGATCAGAGCGGGGTTCGCATTTCAACCGAAGT TGTTGAATCCGTGCTCAAGAGATTCGAGAACGCCGGGATGCTTGCATTCCAATTCTTCGAATGGGCCGATAACCACCGCCATTACGATCACAGCATCAGA GCTTACCATACTATGATCGAGTCGCTTTCCAAGATAAGGCAGTACAGGCTGATGTGGGATCTCGTGAATTCCATGAAGAGCAAGAGGATGTTGAACGTCG AGACGTTTTGCATCATCATGAGGAAGTATGCTCGAGCTAAGAAGGTCGAAGAAGCTGTGTACGCTTTCAATGTGATGGAGAAGTACGATGTGCCGCAAAA TTTAGCTGCTTTCAATGGCTTGCTTAGTGCTCTGTGCAAGTCGCAGAATGTGAGGAAAGCTCAGGAATTGTTCGACGGTATGAAGGATAAGTTCGTTCCG GATTCGAAGACTTATAGTATACTATTGGAAGGATGGGGGAGAGCTCCGGATTTAACGAAAGCGAGGGAGATTTTTTGA
AA sequence Show only first row Show all	>Lus10003703 pacid=23179467 polypeptide=Lus10003703 locus=Lus10003703.g ID=Lus10003703.BGIv1.0 annot-version=v1.0 MRIHSQFSKLYSSRRAFFIRGYSISTIPSVYEQSDSVKTISKIMMSTPAVTLDTALDQSGVRISTEVVESVLKRFENAGMLAFQFFEWADNHRHYDHSIR AYHTMIESLSKIRQYRLMWDLVNSMKSKRMLNVETFCIIMRKYARAKKVEEAVYAFNVMEKYDVPQNLAAFNGLLSALCKSQNVRKAQELFDGMKDKFVP DSKTYSILLEGWGRAPDLTKAREIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10003703 [exp]	0	1
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	52.5	0.6711
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033641 [exp]	56.1	0.6712
AT2G20830			transferases;folic acid bindin...		Lus10018557 [exp]	61.8	0.6707
AT3G18310			unknown protein		Lus10027301 [exp]	92.3	0.6106
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	118.2	0.6410
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	245.5	0.5855
					Lus10026028 [exp]	254.0	0.5998

Compare expression of checked genes

Lus10003703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.